Gene Mutation & DNA repair Flashcards
Mutations
Heritable change in genetic material
_________ changes the DNA sequence
Mutations
What are some advantageous of mutations?
Can cause allelic variation & evolution where if detrimental it can be repaired
____________ are molecular changes in the DNA sequence of a gene (changed a nucleotide in DNA)
Gene mutations
What are the 3 different types of gene mutations?
- Substitution (base substitution which is a type of point mutation)
- Deletion
- Insertion
Point mutation
Change in a single base pair in DNA
Base substitution (type of point substitution)
When one base is substituted for another
Transition
A change from one pyrimidine to another pyrimidine base (like C to T) or from one purine base to another purine base (like A to G)
Transversion
Purines & pyrimidines are interchanged
___________ can alter the coding sequences of a gene
Gene Mutation
Silent mutations
Are mutations that don’t change the amino acid that produce (but does change the codon but still get the same amino acid ) (Genetic material redundant)
Missense mutation
Are base substitution that does change the amino acid that is produced (can have minor or major effects)(ex. sickle cell disease)
Nonsense mutation
Involves a change from a normal codon to a stop condon
Frameshift mutations
Involves the insertion or deletion of a number of nucleotides that are not multiples of 3 or dividably by 3 (group of 3)
_____________ shifts the reading frame causing a new reading frame which changes protein sequence after it
Frameshift
Mutation in noncoding sequences can affect ______________
Gene expression
Up promter mutation
Promoters mutation that increase transcription (makes a sequence more like consence sequence)
Down promoter mutations
Decreases transcription rate & causes a promoter to become less like consensus
Coding regions
Is the protein
Noncoding regions contains the promoter & ______________ & the regulatory sequence is behind the promoter
Deals with the expression level
Mutations can occur in __________ of somatic cells
Germs - Line
Germ cell mutation
Occurs during meiosis & is heritable
Somatic cell mutations
Occurs during mitosis & not heritable
Mutations are ____________
Mostly bad
_____________ can detect, remove, or replace mutations
DNA repair
What are the types of DNA repairs?
- Direct repair
- Base excision & nucleotide excision repair
- Mismatch repair
- Homologous recombination repair
- Non-homologous end joining
Direct repair
Reverse covalent bonds
Photolyase
Repairs thymine dimers or splits (breaks) the dimer
Alkytransferase
Repairs alkylated base (methyl or ethyl group) & transfers alkyl groups to itself
Glycosylase (Involves in Base excision repair)(BEA)
Detects abnormal base & cuts it out
Endonuclease (Involved in Base excision repair BEA)
Cuts the back bone
DNA polymerase in (base excision repair (BEA) )
Removes abnormal segments & fills in the gap
DNA ligase (in Base excision repair (BEA) )
Seals the remaining gap
What mutation is the worst mutation?
Non-sense mutation (but not always bad)
CCR5 mutation
Deletes CCR5 & is HIV resistant therapy
LPA mutation
Decrease heart disease
PCSK9 heterozygous mutation
Causes overdominance (heterozygous advantage) & blocks PCSK9 protein by 50%
Mutation can increase
- Endurance
- Flexibility
- Strength
- Wakefulness
- Durability
What are the step in nucleotide excision repair (NER)?
- Uvr A/B looks for mutation (thymine dimer)
- Uvr A/B finds the mutation
- Uvr A leaves & Uvr C binds
- UrvC cuts DNA & Uvr D removes damaged region
- DNA polymerase fills in the gap with new region & ligase seals the cuts
Xerodermine Pigmentosum (XP)
Is an NER disease & is sun sensitive
Mismatch repair steps
- Chargaff rule - A binds to T & G binds to C
- DNA polymerase proofreads in the 3’ to 5 direction & if its detects a mismatch can repair it
- MutS finds mismatch & MutH/L binds to it
- MutH cuts new strand
- DNA polymerase fills gap ligase seals gap
Double stranded break
Can lead to translocation (have 100 break per day)
What are the 2 types of repairs for broken chromosomes?
- Homologous recombination (HRR)
2. Non-homologous end joining (NHEJ)
Homologous recombination repair steps
- Double strand break
- End processing
- Strand exchange
- DNA synthesis
- Ligation
Non-homologous end joining process
- Double stranded
- End binding protein bind to DNA strand
- Repair proteins repair break
- Gap filling & ligation
Which repair system for broken chromosome is used more often & safer?
Non-homologous because not dividing sister chromatids(used 80% of the time to fixed double strand break)
CRISPR
Breaks chromosomes & causes mutation
What are the steps in base excision repair?
- Glycosylase recognize abnormal base & break the bond between the base & sugar phosphate back bone
- Endonuclease recognizes the missing base & breaks (cut) the DNA backbone near the missing base region
- DNA polymerase removes the damaged region & replaces it with a new region & fills in the gap with the region
- Ligase seals the little cuts in the backbone of the new region