Principle 3- Part A Flashcards

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1
Q

_____ kills E. coli that do not invade.

A

Gentamycin

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2
Q

______does not penetrate mammalian cells.

A

Gentamycin

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3
Q

______ is used to identify certain genes that confer invasiveness on E. Coli

A

Genetic complementation

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4
Q

In order to prove that a specific gene promotes some action, is there usually a gain or loss of function mutation in genetic complementation?

A

Loss of function

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5
Q

A ____ plasmid can’t replicate in the original bacteria but can possibly replicate in another bacterium

A

Suicide plasma

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6
Q

How is the suicide plasmid containing inv loss-of-function mutation transferred from E. coli to Y.psuedotuberculosis

A

Sex pillus

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7
Q

How many recombination events are needed to replace the inv gene in Y. pseudotuberculosis with the loss-of-function inv allele?

A

2

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8
Q

_____ is a small, mobile piece of DNA

A

transposon

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9
Q

A ____ transposon is made up of a core area surrounded by an inverted repeated sequence sandwiched between direct repeat sequences flanking the IS

A

Simple transposon

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10
Q

A ____ transposon is made up of some sort of gene sandwiched between two insertion sequences

A

Composite transposon

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11
Q

Insertion of a transposon in a gene most often creates a ______ mutation

A

loss-of-function

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12
Q

A ______ marks the site of the mutation

A

Transposon

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13
Q

_____ determines which genes are virulence factors that encode exported genes

A

Tn-phoA mutagenesis

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14
Q

_____ gene encodes a periplasmic phosphatase

A

phoA gene

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15
Q

engineered phoA gene lacks ______ so expression depends on fusion to an adjacent gene after transposition

A

N-terminus

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16
Q

engineered phoA gene lacks N-terminus so expression depends on fusion to an adjacent gene ____ transposition

A

after

17
Q

phoA has a substrate called ______

A

X-P dye

18
Q

Vibrio cholerae virulence genes maximally expressed at pH ___ and ____ osmolarity

A

6.5 and high osmolarity

19
Q

_____ is a screen for a negative trait

A

Signature-tagged mutagenesis

20
Q

Genetic ______: examine individual bacteria for desirable trait

A

Screen

21
Q

Genetic ______: only bacteria with desirable trait grow (Gentamycin selection in complementation assay)

A

Selection

22
Q

Look for genes of S. typhimurium that are expressed in infection but not in the laboratory
This is only one strategy but it is doable.

A

Promoter-trapping (IVET: in vitro expression technology

23
Q

In promoter-trapping, the promoter is needed for _____ to be expressed in mouse

A

Purine

24
Q

_____ is doen in cells to sort them; usually uses macrophages to help to sort the bacteria

A

DFI: Differential fluorescence induction

25
Q

_____ is an antibody-based approach based on the patient’s actual response to pathogen

A

IVIAT: In vivo-induced antigen technology

26
Q

_____ isolates RNA from bacteria and forms cDNA via reverse transcriptase in vivo and compares to in vitro samples

A

Microarray

27
Q

If microarray well is ____, pnt and lab gene expression is about equivalent

A

Yellow

28
Q

If microarray well is ____, pnt gene expression is greater than lab meaning more RNA from pnt

A

Green

29
Q

If microarray well is ____, lab sample gene expression is greater than lab meaning more RNA from lab sample

A

Red

30
Q

____ is used to compare nonpathogenic strains of a bacterial species to pathogenic variants

A

Whole genome sequencing

31
Q

In whole genome sequencing, ____ regions of genome are unique to E. coli strain O157:H7. These regions contain genes important for pathogenicity.

A

Red

32
Q

_____ is a transcription analysis that uses to the whole genome sequence to sequence and analyze the total RNA population of the pathogen; can look at mixed samples with this technique

A

RNA sequencing

33
Q

Which transcription analysis is more sensitive and has a wider dynamic range? Microarray or RNA seq?

A

RNA sequencing