BIO - TERMS - FREQUENCY > 1 PT 4 Flashcards

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1
Q

ABC transporters

A

A large family of membrane transport proteins that use the energy of ATP hydrolysis to transfer peptides or small molecules across membranes. // Plasma membrane proteins with sequences that make up ATP-binding cassettes; serve to transport a large variety of substrates, including inorganic ions, lipids, and nonpolar drugs, out of the cell, using ATP as the energy source.

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2
Q

activation-induced deaminase // activation-induced cytidine deaminase // AID

A

The enzyme catalyzing the processes of somatic hypermutation and immunoglobulin class switching in activated B cells. // Enzyme that initiates somatic hypermutation and isotype switching by deaminating DNA directly at cytosine in immunoglobulin V regions or switch regions. Loss of AID activity in patients leads to loss of both activities, causing hyper IgM and lack of affinity maturation.

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3
Q

aerobic

A

Requiring oxygen for energy metabolism. // Requiring or occurring in the presence of oxygen.

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4
Q

alkene

A

A hydrocarbon containing one or more carbon–carbon double bonds. // A hydrocarbon that contains a carbon–carbon double bond, R2C=CR2.

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5
Q

aminoacyl-tRNA

A

An aminoacyl ester of a tRNA. // A transfer RNA (tRNA) with an amino acid covalently bound to its 3′ terminus.

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6
Q

Anchorage dependence

A

The inability of cultured cells to grow in the absence of a solid support. // Dependence of cell growth, proliferation, and survival on attachment to a substratum. anchoring junction Cell junction that attaches cells to neighboring cells or to the extracellular matrix.

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7
Q

antiparallel

A

Describes two linear polymers that are opposite in polarity or orientation. // Describes the relative orientation of the two strands in a DNA double helix or two paired regions of a polypeptide chain; the polarity of one strand is opposite to that of the other.

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8
Q

Arrestin

A

A cytoplasmic protein that binds to activated hormone receptors, inactivating them and marking them for endocytosis. // Member of a family of proteins that contributes to GPCR desensitization by preventing the activated receptor from interacting with G proteins and serving as an adaptor to couple the receptor to clathrin-dependent endocytosis.

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9
Q

attenuated vaccine // replication-competent vaccine

A

A vaccine containing live, attenuated (weakened) microorganisms. // A vaccine made from viral mutants that have reduced virulence but can reproduce; they oft en also have reduced capacity for transmission. (Chapter 8)

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10
Q

auxin

A

A plant growth hormone. // Plant hormone, commonly indole-3-acetic acid, with numerous roles in plant growth and development. axon Long nerve cell projection that can rapidly conduct nerve impulses over long distances so as to deliver signals to other cells.

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11
Q

base substitution

A

The replacement of a single base in DNA by another base, causing a mutation; also called point mutation. // A single base change in a DNA molecule. (See also Transition; Transversion.)

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12
Q

Biotin

A

The prosthetic group of carboxylase enzymes. // A vitamin; an enzymatic cofactor involved in carboxylation reactions.

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13
Q

brightfield microscope

A

A microscope that uses visible light for illumination; the specimens are viewed against a white background. // Normal light microscope in which the image is obtained by simple transmission of light through the object being viewed.

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14
Q

Carbamoyl phosphate

A

An intermediate in the synthesis of urea and pyrimidines. // A negatively charged compound that is a key compound in the urea cycle necessary to convert ammonia to urea for disposal.

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15
Q

Catabolic pathway

A

Degradative pathway. // A pathway by which an organic molecule is degraded in order to obtain energy for growth and other cellular processes; degradative pathway.

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16
Q

cerebrum

A

The largest part of the forebrain; also called telencephalon. // (ser′ē-brŭm, ser′ĕ- brŭm) The largest, most superior part of the brain; composed of the left and right cerebral hemispheres; location of conscious thought processes and origin of all complex intellectual functions.

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17
Q

chiral

A

A term that describes an environment or a molecule that is not superimposable on its mirror image; chiral molecules exhibit optical isomerism. // Having handedness. Chiral molecules are those that do not have a plane of symmetry and are therefore not superimposable on their mirror image. A chiral molecule thus exists in two forms, one right-handed and one left-handed. The most common cause of chirality in a molecule is the presence of a carbon atom that is bonded to four different substituents.

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18
Q

chromatophore

A

A compound or moiety (natural or synthetic) that absorbs visible or ultraviolet light. // An infolding in the plasma membrane where bacteriochlorophyll is located in photoautotrophic bacteria; also known as thylakoids.

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19
Q

Coiled coil

A

Two or three α-helices coiled around each other. // Especially stable rodlike protein structure formed by two or more α helices coiled around each other.

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20
Q

complex carbohydrate

A

Another term for a polysaccharide based on the fact that it is made up of many simple sugars. // Carbohydrates that are made of two or more simple sugars linked together by glycoside bonds.

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21
Q

connective tissue

A

A fibrous tissue that is involved in connecting other structures with one another and is composed of predominantly collagen protein. // Any supporting tissue that lies between other tissues and consists of cells embedded in a relatively large amount of extracellular matrix. Includes bone, cartilage, and loose connective tissue.

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22
Q

Copolymers

A

Polymers obtained when two or more different monomers are allowed to polymerize together. // Mixtures consisting of more than one monomer; for example, polymers of two kinds of organic bases such as uracil and cytosine (poly-UC) have been combined for studies of the genetic code.

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23
Q

Cytochrome oxidase

A

Complex IV in the respiratory chain; transfers electrons to O2. // A mitochondrial enzyme concentrated in cells that form the blobs in primary visual cortex.

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24
Q

Denitrification

A

Reduction of nitrate and nitrite ultimately releasing N2. // The reduction of nitrogen in nitrate to nitrite or nitrogen gas.

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25
Q

diencephalon

A

(dı̄-en-sef′ă-lon) Brain region deep to the cerebrum; contains the thalamus, hypothalamus, and epithalamus. // A region of the brain stem derived from the prosencephalon (forebrain). Diencephalic structures include the thalamus and hypothalamus.

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26
Q

Dissociation constant (KD)

A

A measure for the affinity between a protein and its ligand. // An equilibrium constant (Kd) for the dissociation of a complex of two or more biomolecules into its components; for example, dissociation of a substrate from an enzyme.

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27
Q

DNA vaccine

A

Injection of DNA into animal cells so that the cells produce the antigen that will stimulate the immune system. // A preparation of DNA containing the genes for one or more antigenic proteins; when the pure DNA preparation is injected into a test subject and enters cells, the proteins are synthesized, and an immune response to those proteins is elicited. (Chapter 8)

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28
Q

Ecotype

A

A population or strain of organisms that is adapted to a particular habitat. // A subspecies showing special adaption to distinct environmental conditions.

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29
Q

electromagnetic spectrum

A

The range of the wavelengths of all possible electromagnetic radiation. // The range of electromagnetic energy, including infrared, ultraviolet, and visible radiation.

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30
Q

Endemic

A

Having a disease pattern typical of a particular geographic area; persisting in a population for a long period without reintroduction of the causative virus from outside sources. (Chapter 1) // A disease or condition typical of a particular population or geographic area; persisting in a population for a long period without reintroduction of the causative agent from outside sources. (Chapter 1)

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31
Q

eosinophil

A

A granulocyte whose granules take up the stain eosin. // (ē-ō-sin′ō-fil) White blood cell that destroys parasitic worms and phagocytizes antibodyantigen complexes.

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32
Q

ether

A

A member of the family of organic compounds of the form ROR. // A class of compounds that has two organic substituents bonded to the same oxygen atom, ROR’.

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33
Q

FAD/FADH2 (flavin adenine dinucleotide/reduced flavin adenine dinucleotide)

A

Electron carrier system that functions in the citric acid cycle and fatty acid oxidation. One molecule of FAD gains two electrons plus two protons in becoming the activated carrier FADH2.

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34
Q

fimbria (plural: fimbriae)

A

An appendage on a bacterial cell used for attachment. // (fim′brē-ă; pl., fimbriae, -brē-ē) Any fringelike structure; e.g., the fimbriae of the infundibulum surround the ovary at the time of ovulation.

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35
Q

focal adhesion kinase (FAK)

A

Cytoplasmic tyrosine kinase present at cell–matrix junctions (focal adhesions) in association with the cytoplasmic tails of integrins.

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36
Q

G1/S-Cdk

A

Cyclin–Cdk complex formed in vertebrate cells by a G1/S-cyclin and the corresponding cyclin-dependent kinase (Cdk).

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37
Q

gastric

A

(gas′trik) Relating to the stomach. // Refers to the stomach.

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38
Q

germ-free mice

A

Mice that are raised in the complete absence of intestinal and other microorganisms. Such mice have very depleted immune systems, but they can respond virtually normally to any specific antigen, provided it is mixed with a strong adjuvant.

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39
Q

glycogenolysis

A

(glı̄′kō-je-nol′i-sis) Breakdown of glycogen into glucose. // The enzymatic breakdown of stored (not dietary) glycogen.

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40
Q

granuloma

A

A lump of inflamed tissue containing macrophages. // A site of chronic inflammation usually triggered by persistent infectious agents such as mycobacteria or by a nondegradable foreign body. Granulomas have a central area of macrophages, often fused into multinucleate giant cells, surrounded by T lymphocytes.

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41
Q

halogen

A

Highly reactive nonmetals in group 7A of the periodic table. // One of the following elements: fluorine, chlorine, bromine, iodine, or astatine.

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42
Q

Heparan sulfate

A

A glycosaminoglycan (GAG) in many cell surface and connective tissue proteoglycans. // A sulfated polymer of alternating N-acetylglucosamine and a uronic acid, either glucuronic or iduronic acid; typically found in the extracellular matrix.

43
Q

homologous

A

(hŏ-mol′ō-gŭs) Alike in certain critical attributes; e.g., homologous chromosomes. // Genes, proteins, or body structures that are similar as a result of a shared evolutionary origin.

44
Q

Hydrolase

A

Enzyme catalyzing hydrolytic cleavage reactions. // Enzymes (proteases, lipases, phosphatases, nucleases, for example) that catalyze hydrolysis reactions.

45
Q

hypertension

A

High blood pressure. // (hı̄′pĕr-ten′shŭn). Persistently elevated blood pressure.

46
Q

immune surveillance

A

The body’s immune response to cancer. // The recognition, and in some cases the elimination, of tumor cells by the immune system before they become clinically detectable.

47
Q

in situ colony or plaque hybridization

A

A procedure for screening colonies or plaques growing on plates or membranes for the presence of specific DNA sequences by the hybridization of nucleic acid probes to the DNA molecules present in these colonies or plaques.

48
Q

inflammasome

A

Intracellular protein complex formed after activation of cytoplasmic NOD-like receptors with adaptor proteins. It contains a caspase enzyme that cleaves proinflammatory cytokines from their precursor proteins. // A pro-inflammatory protein complex that is formed after stimulation of the intracellular NOD-like receptors. Production of an active caspase in the complex processes cytokine proproteins into active cytokines. inflammation General term for the local accumulation of fluid, plasma proteins, and white blood cells that is initiated by physical injury, infection, or a local immune response.

49
Q

Insertion mutation

A

Addition of one or more nucleotides to a nucleic acid sequence. (Chapter 3) // A mutation caused by insertion of one or more extra bases, or a mutagen, between successive bases in DNA. insertion sequence Specific base sequences at either end of a transposable segment of DNA.

50
Q

ipsilateral

A

(ip-si-lat′er-ăl) Relating to the same side. // An anatomical reference meaning on the same side of the midline.

51
Q

ketoacidosis

A

(kē′tō-as-i-dō′sis) Accumulation of ketone bodies (ketoacids) in the blood; a symptom of diabetes mellitus. // A metabolic emergency in insulindependent diabetic patients, with hyperglycemia, acidosis, dehydration, and electrolyte imbalances.

52
Q

laminin

A

Extracellular matrix fibrous protein found in basal laminae, where it forms a sheetlike network. // A glycoprotein in basement membranes. LDL receptor A lipoprotein receptor that mediates the endocytosis of low-density lipoprotein (LDL).

53
Q

Leucine zipper

A

A structural feature of some DNAbinding proteins, required for dimerization. // A protein structural motif involved in protein-protein interactions in many eukaryotic regulatory proteins; consists of two interacting helices in which Leu residues in every seventh position are a prominent feature of the interacting surfaces.

54
Q

Lipolysis

A

Triglyceride hydrolysis. // (li-pol′i-sis) Breakdown of triglycerides to glycerol and fatty acids.

55
Q

Lyase

A

An enzyme that removes a group nonhydrolytically from its substrate. // Enzymes that catalyze the removal of a group from a molecule to form a double bond, or the addition of a group to a double bond.

56
Q

mechanoreceptor

A

(mek′ă-nō-rē- sep′tŏr) Sensory receptor that responds to distortion of the plasma membrane caused by touch, vibration, pressure, or stretch. // Any sensory receptor selective for mechanical stimuli, such as hair cells of the inner ear, various receptors of the skin, and stretch receptors of skeletal muscle.

57
Q

Metastases

A

Secondary tumors, oft en at distant sites, that arise from the cells of a malignant tumor. (Chapter 6) // Secondary tumors, at sites in the body additional to that of the primary tumor, resulting from cancer cells breaking loose, entering blood or lymphatic vessels, and colonizing separate environments.

58
Q

microwave

A

Electromagnetic radiation with wavelength between 1021 and 10-3 m. // Electromagnetic radiation with wavelengths slightly longer than those of infrared radiation; used for radar and in microwave ovens.

59
Q

monomorphic

A

Describes a gene that occurs in only one form. Cf. polymorphic. // Having a single shape; most bacteria always present with a genetically determined shape. See also pleomorphic.

60
Q

MYC

A

An oncogene or proto-oncogene coding for a nuclear transcription factor, amplified in many spontaneous cancers.

61
Q

neoplasia

A

(nē-ō-plā′zē-ă) Process that results in the formation of a neoplasm or abnormal growth. // Abnormal growth of either a benign or a malignant nature.

62
Q

neurotrophin

A

A member of a family of related neuronal trophic factors, including nerve growth factor and brain-derived neurotrophic factor. // Family of signal proteins that promote the survival and growth of specific classes of neurons.

63
Q

node

A

A point where the wave function (ψ), and therefore the probability density (ψ²) and radial distribution function, all go through zero. // A surface of zero electron density within an orbital. For example, a p orbital has a nodal plane passing through the center of the nucleus, perpendicular to the axis of the orbital.

64
Q

nuclear localization signal (NLS)

A

Amino acid sequence that is necessary and sufficient for import of a protein into the nucleus. (Chapter 5) // Signal sequence or signal patch found in proteins destined for the nucleus that enables their selective transport into the nucleus from the cytosol through the nuclear pore complexes.

65
Q

oogenesis

A

(ō-ō-jen′ĕ-sis) Formation and development of oocytes. // The formation of the egg or ovum in animals.

66
Q

Organizer

A

An inductor; a chemical substance in a living system that determines the fate in development of certain cells or groups of cells. // Specialized tissue at the dorsal lip of the blastopore in an amphibian embryo; a source of signals that help to orchestrate formation of the embryonic body axis.

67
Q

p53

A

A transcription regulatory protein that is activated by damage to DNA and is involved in blocking further progression through the cell cycle. // Tumor suppressor gene that is mutated in about half of human cancers. Encodes a transcription regulator that is activated by damage to DNA and is involved in blocking further progression through the cell cycle.

68
Q

parasitism

A

A symbiotic relationship in which one organism (the parasite) exploits another (the host) without providing any benefit in return. // Ecological relationship between microbes and their host in which the microbe benefits to the detriment of the host, as is often the case for pathogens.

69
Q

peptidases

A

Enzymes that hydrolyze peptide bonds. // Enzymes that cleave peptide bonds in polypeptides.

70
Q

phagolysosome

A

A digestive vacuole. // Intracellular vesicle formed by the fusion of a phagosome (containing ingested material) and a lysosome, and in which the ingested material is broken down.

71
Q

photoreceptor

A

A specialized cell in the retina that transduces light energy into changes in membrane potential. // Specialized receptor cells in the eye that detect light. See rod; cone.

72
Q

plankton

A

Free-floating aquatic organisms. // Small organisms floating or drifting in fresh or salt water.

73
Q

Polyadenylation

A

The addition of ~200 A residues to the 3’ ends of cellular and viral transcripts made in eukaryotic cells. (Chapter 10) // The addition of poly(A) tails to eukaryotic gene transcripts (RNAs).

74
Q

Population

A

Entire group of organisms of one kind; an interbreeding group of plants or animals; the extensive group from which a sample might be taken.

75
Q

prevalence

A

The fraction of a population having a specific disease at a given time. // Th e proportion of individuals in a population having a disease; the number of cases of a disease present in a particular population at a given time. (Chapter 1)

76
Q

protein kinase A (PKA)

A

The cyclic AMP-activated protein kinase. // A protein kinase activated by the second messenger cAMP.

77
Q

R

A

Used to represent nonfunctional groups of a molecule. See also resistance factor. // A generalized abbreviation for an organic partial structure.

78
Q

recombinant DNA (rDNA) technology

A

Manufacturing and manipulating genetic material in vitro; also called genetic engineering. // Collection of techniques by which DNA segments from different sources are combined to make a new DNA, often called a recombinant DNA. Recombinant DNAs are widely used in the cloning of genes, in the genetic modification of organisms, and in the production of large amounts of rare proteins.

79
Q

regulator of G protein signaling (RGS)

A

A GAP protein that binds to a trimeric G protein and enhances its GTPase activity, thus helping to limit G-protein-mediated signaling. // Protein structural domain that stimulates the GTPase activity of heterotrimeric G proteins.

80
Q

reservoir // reservoir of infection

A

A continual source of infection. // Th e host population in which a viral population is maintained. (Chapters 1 and 11)

81
Q

retinoblastoma

A

A rare type of human cancer arising from cells in the retina of the eye that are converted to a cancerous state by an unusually small number of mutations. Studies of retinoblastoma led to the discovery of the first tumor suppressor gene. // A rare tumor of immature retinal cells in children; can be either sporadic or inherited.

82
Q

rubisco (ribulose-1,5-bisphosphate carboxylase oxygenase)

A

Is an enzyme regulating the carboxylation of ribulose-1,5-bisphosphate or oxygenation. The protein complex consists of a large and a small subunit. // The enzyme that fixes inorganic CO2 into organic form (3-phosphoglycerate) in those organisms (plants and some microorganisms) capable of CO2 fixation.

83
Q

scavenger receptors

A

Receptors on macrophages and other cells that bind to numerous ligands, such as bacterial cell-wall components, and remove them from the blood. The Kupffer cells in the liver are particularly rich in scavenger receptors. Includes SR-A I, SR-A II, and MARCO. // Lipoprotein receptors with broad substrate specificity that mediate the uptake of lowdensity lipoprotein (LDL) by macrophages.

84
Q

secretory vesicle

A

A membrane-enclosed sac produced by the endoplasmic reticulum (ER); transports synthesized material into cytoplasm. // Membrane-enclosed organelle in which molecules destined for secretion are stored prior to release. Sometimes called secretory granule because darkly staining contents make the organelle visible as a small solid object.

85
Q

Serotype

A

A virus type as defined on the basis of neutralizing antibodies. (Chapter 2) // Name given to a strain of bacteria, or other pathogen, that can be distinguished from other strains of the same species by specific antibodies.

86
Q

Signal transduction cascade or pathway

A

A chain of sequential physical interactions among, and biochemical modifi cations of, membrane-bound and cytoplasmic proteins. (Chapter 6) // A chain of sequential physical interactions among, and biochemical modification of, membrane-bound, cytoplasmic, and nuclear proteins. (Chapter 14)

87
Q

solution

A

A homogeneous mixture composed of a solvent and a solute. // A homogeneous mixture of two substances.

88
Q

sperm (abbreviation of spermatozoon, pl, spermatozoa)

A

Male gamete produced in the testes. // A mature male germ cell.

89
Q

standard free energy change (ΔG°rxn)

A

The change in free energy for a process when all reactants and products are in their standard states. // The free-energy change for a reaction occurring under a set of standard conditions temperature, 298 K; pressure, 1 atm or 101.3 kPa; and all solutes at 1 M concentration. DG98 denotes the standard free-energy change at pH 7.0 in 55.5 M water.

90
Q

stress fibers

A

Cortical fibers of contractile actin-myosin II bundles that connect the cell to the extracellular matrix or adjacent cells through focal adhesions or a circumferential belt and adherens junctions. // Actin microfilaments underlying the plasma membrane.

91
Q

symport

A

Cotransport of solutes across a membrane in the same direction. // Coupled membrane transport of two substrates in the same direction.

92
Q

temperate phage

A

A phage capable of lysogeny. // A phage (virus) that invades but may not destroy (lyse) the host (bacterial cell) (cf. Virulent phage). However, it may subsequently enter the lytic cycle.

93
Q

tetrahydrobiopterin

A

The reduced coenzyme form of biopterin. // A coenzyme for the hydroxylation of aromatic amino acids.

94
Q

thermoreceptor

A

(ther′mō-rē- sep′ter, -tōr) Sensory receptor that is sensitive to heat. // A sensory receptor selective for temperature changes.

95
Q

topology

A

The study of the properties of an object that do not change under continuous deformations such as twisting or bending. // The geometric arrangement of, and connections among, secondary-structure units in a protein. (Chapter 4)

96
Q

transgene

A

The foreign or modified gene that has been added to create a transgenic organism. // A foreign or modified gene that has been introduced into an organism.

97
Q

triose

A

A simple sugar with a backbone containing three carbon atoms. // Three-carbon sugar.

98
Q

ulcerative colitis

A

Inflammation and ulcers of the colon. // One of the two major types of inflammatory bowel disease thought to result from an abnormal overresponsiveness to the commensal gut microbiota. See also Crohn’s disease.

99
Q

v-SNAREs

A

Protein receptors in the membrane of a secretory vesicle (typically the plasma membrane) that bind to t-SNAREs in a targeted membrane (typically the plasma membrane) of a secretory vesicle and mediate fusion of the vesicle and target membranes. // Transmembrane SNARE protein, comprising a single polypeptide chain, usually found in vesicle membranes where it interacts with t-SNAREs in target membranes.

100
Q

viremia

A

The presence of viruses in the blood. // The presence of infectious virus particles in the blood. (Chapter 2)

101
Q

voltage-gated K+ channel // voltage-gated potassium channel

A

Ion channel in the membrane of nerve cells that opens in response to membrane depolarization, enabling K+ efflux and rapid restoration of the negative membrane potential. // A membrane protein forming a pore that is permeable to K+ and gated by depolarization of the membrane.

102
Q

xenograft (xenotransplantation product)

A

A tissue graft from another species. // Grafted organs taken from a different species than the recipient.

103
Q

ΔG

A

Change in the free energy during a reaction: the free energy of the product molecules minus the free energy of the starting molecules. A large negative value of ΔG indicates that the reaction has a strong tendency to occur.