BIO - TERMS - FREQUENCY > 1 PT 1 Flashcards

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1
Q

3-hydroxy-3-methylglutaryl-co-enzyme A (HMG-CoA) reductase

A

The regulated enzyme of cholesterol synthesis. // Ratelimiting enzyme in the production of cholesterol and a target of cholesterollowering drugs such as the statins.

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2
Q

acetylcholine // ACh

A

Neurotransmitter produced by the central and peripheral nervous systems. // An amine that serves as a neurotransmitter at many synapses in the peripheral and central nervous systems, including the neuromuscular junction.

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3
Q

adenylyl cyclase (adenylate cyclase)

A

An enzyme that catalyzes the conversion of adenosine triphosphate (ATP) to cyclic adenosine monophosphate (cAMP), a second messenger. // Membrane-bound enzyme that catalyzes the formation of cyclic AMP from ATP. An important component of some intracellular signaling pathways.

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4
Q

Aldehydes (RCHO)

A

A class of compounds containing the -CHO functional group. // A member of the family of organic compounds that contain a carbonyl functional group (C=O) bonded to two R groups, one of which is a hydrogen atom.

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5
Q

Alternative pathway

A

One of three pathways in the complement system; activates the C3 and C5 convertases without going through the C1-C2-C4 complex. (Chapter 3) // A form of complement activation that is initiated by spontaneous hydrolysis of C3 and which uses factor B and factor D to form the unique C3 convertase C3bBb.

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6
Q

Anabolic pathway

A

Biosynthetic pathway. // A pathway by which a metabolite is synthesized; a biosynthetic pathway.

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7
Q

antidiuretic hormone (ADH)

A

Hormone released by the posterior pituitary gland; increases water reabsorption in the kidney and reduces urine production. // A peptide hormone produced by the hypothalamus that facilitates the reabsorption of water by the kidney tubules. Also known as vasopressin. anthocyanidin A class of purple to blue plant flavonoid pigments without sugar moieties attached that have potential health benefits such as cancer prevention as well as antiaging and anti-inflammatory effects.

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8
Q

Apolipoprotein

A

Protein component of a lipoprotein.

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9
Q

atomic mass unit (AMU)

A

A unit of mass for atomic and molecular weights. // A unit used to express the masses of atoms and subatomic particles, defined as 1/12 the mass of a carbon atom containing 6 protons and 6 neutrons.

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10
Q

autophagosome

A

Organelle surrounded by a double membrane contains engulfed cytoplasmic cargo in the initial stages of autophagy. // A double bilayer membrane structure that functions in macroautophagy by engulfing cytoplasmic contents and fusing with lysosomes.

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11
Q

bacteriocin

A

An antimicrobial peptide produced by bacteria that kills other bacteria. // Proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related bacterial strain(s).They are typically considered to be narrow spectrum antibiotics though this has been debated.

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12
Q

Bilirubin

A

A yellow pigment formed from biliverdin. // (bil-i-rū′bin) Waste product derived from the breakdown of hemoglobin and excreted in bile.

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13
Q

bond length

A

The average length of a bond between two particular atoms in a variety of compounds. // The equilibrium distance between the nuclei of two atoms that are bonded to each other.

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14
Q

cancer

A

Various types of malignant cells that multiply out of control. // Disease involving a malignant neoplasm that can metastasize (spread to other organs).

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15
Q

Carnitine

A

A coenzyme that carries long-chain fatty acids into the mitochondrion. // Essential for transport of fatty acyl CoA from cytoplasm to mitochondria for β oxidation; synthesized by most species except some insects, which require a dietary source for growth

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16
Q

cerebellum

A

(ser-e-bel′ŭm) The second largest part of the brain; develops posteriorly to the pons in the metencephalon. // A structure derived from the rhombencephalon, attached to the brain stem at the pons; an important movement control center.

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17
Q

chemoreceptor

A

Any sensory receptor selective for chemicals. // (kē′mō-rē-sep′tor) Peripheral sensory receptor or specialized cells within the brain that detect specific chemicals in a fluid; e.g., taste receptors.

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18
Q

Cholestasis

A

Lack of bile flow. // Little or no bile secreted.

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19
Q

cleavage

A

(klēv′ij) Series of mitotic cell divisions occurring in the zygote immediately following its fertilization. // (1) Physical splitting of a cell into two. (2) Specialized type of cell division seen in many early embryos whereby a large cell becomes subdivided into many smaller cells without growth.

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20
Q

Competence (adj, competent)

A

Ability of a bacterial cell to incorporate DNA and become genetically transformed. // The physiological state in which a recipient cell can take and incorporate a large piece of donor DNA.

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21
Q

conjugative plasmid

A

A prokaryotic plasmid that carries genes for sex pili and for transfer of the plasmid to another cell.

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22
Q

contralateral

A

(kon-tră-lat′er-ăl) Relating to the opposite side. // An anatomical reference meaning on the opposite side of the midline.

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23
Q

cyclic photophosphorylation

A

ATP synthesis driven by cyclic electron flow through photosystem I. // The movement of an electron from chlorophyll through a series of electron acceptors and back to chlorophyll; anoxygenic; purple and green bacterial photophosphorylation.

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24
Q

Degeneracy (of the genetic code)

A

The specification of an amino acid by more than one codon. // Redundancy of the genetic code; that is, most amino acids are encoded by several codons.

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25
Q

diabetes mellitus

A

(me-lı̄′tŭs) Disease involving reduced insulin release or reduced tissue response to insulin; leads to elevated blood and urine glucose levels. // A group of metabolic diseases with symptoms that result from a deficiency in insulin production or utilization; characterized by a failure in glucose transport from the blood into cells at normal glucose concentrations.

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26
Q

dislocation

A

(dis-lō-kā′shŭn) A joint injury where there is complete displacement of a bone from its normal position. // In reference to viral defense mechanisms, the degradation of newly synthesized MHC class I molecules by viral proteins.

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27
Q

DNA primase

A

Enzyme that synthesizes a short strand of RNA on a DNA template, producing a primer for DNA synthesis. // An enzyme that catalyzes the synthesis of short strands of RNA that initiate the synthesis of DNA strands.

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28
Q

Dynein

A

The ATPase that moves cilia and flagella. // Large motor protein that undergoes ATP-dependent movement along microtubules.

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29
Q

electrical current

A

The flow of electric charge. // The rate of movement of electrical charge, represented by the symbol I and measured in amperes (amp).

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30
Q

element

A

Substance composed of only one type of atom. // A substance that cannot be chemically broken down into simpler substances.

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31
Q

endotoxin

A

Part of the outer portion of the cell wall (lipid A) of most gram- negative bacteria; released on destruction of the cell. // Toxins derived from bacterial cell walls released by damaged cells. They can potently induce cytokine synthesis and in large amounts can cause a systemic reaction called septic shock or endotoxic shock.

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32
Q

essential fatty acid

A

The group of polyunsaturated fatty acids produced by plants, but not by humans; required in the human diet. // A fatty acid needed by the body that must be supplied by the diet because the tissues are unable to synthesize it.

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33
Q

Fab // Fab fragment

A

The antigen-binding fragment of immunoglobulins. // Antibody fragment composed of a single antigen-binding arm of an antibody without the Fc region, produced by cleavage of IgG by the enzyme papain. It contains the complete light chain plus the amino-terminal variable region and first constant region of the heavy chain, held together by an interchain disulfide bond.

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34
Q

Fiber

A

A thin thread produced by extruding a molten polymer through small holes in a die. // Indigestible fibrous structural molecule found in plant tissue; includes indigestible straight and branchedchain polysaccharides as well as lignin.

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35
Q

fluorescence microscope

A

A microscope that uses an ultraviolet light source to illuminate specimens that will fluoresce. // Microscope designed to view material stained with fluorescent dyes or proteins. Similar to a light microscope but the illuminating light is passed through one set of filters before the specimen, to select those wavelengths that excite the dye, and through another set of filters before it reaches the eye, to select only those wavelengths emitted when the dye fluoresces.

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36
Q

fructan

A

Are polymers of fructose usually with a sucrose molecule at the end. // A class of fructose-based polymers of varying length that includes inulin, oligofructose, and fructooligosaccharides (FOS).

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37
Q

gamma motor neuron

A

A motor neuron that innervates intrafusal muscle fibers.

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38
Q

genome-wide association studies (GWASs)

A

A study that relates a large number of DNA variants to a disease or other phenotype. // Genetic association studies in the general population that look for a correlation between disease frequency and variant alleles by scanning the genomes of many people for the presence of informative single-nucleotide polymorphisms (SNPs).

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39
Q

glycocalyx

A

A gelatinous polymer surrounding a cell. // (glı̄-kō-kā′liks) Carbohydrate coating on the apical surface of cells formed by glycolipids and glycoproteins.

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40
Q

Graft copolymer

A

Linear heteropolymers with branches of one type of monomer “hung” from a main chain consisting of another homopolymer. // Copolymers in which homopolymer branches of one monomer unit are “grafted” onto a homopolymer chain of another monomer unit.

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41
Q

gustation

A

(gŭs-tā′shŭn) Sense of taste.

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42
Q

Hemolysis

A

Destruction of erythrocytes. // (hē-mol′i-sis) The process of rupture and destruction of erythrocytes.

43
Q

histology

A

(his-tol′ō-jē) Study of tissues. // The microscopic study of the structure of tissues.

44
Q

Hybrid orbital

A

Orbitals formed from the combination of standard atomic orbitals that correspond more closely to the actual distribution of electrons in a chemically bonded atom. // An orbital derived from a combination of atomic orbitals. Hybrid orbitals, such as the sp3, sp2, and sp hybrids of carbon, are strongly directed and form stronger bonds than atomic orbitals do.

45
Q

hyper IgM syndrome

A

A group of genetic diseases in which there is overproduction of IgM antibody, among other symptoms. They are due to defects in various genes for proteins involved in class switching such as CD40 ligand and the enzyme AID. See activation-induced cytidine deaminase, CD40 ligand deficiency.

46
Q

hypotonic solution

A

A solution that has a lower concentration of solutes than an isotonic solution. // Solution with a lower solute concentration and a higher water concentration than that of the cytosol.

47
Q

immunotoxin

A

An immunotherapeutic agent consisting of a poison bound to a monoclonal antibody. // Antibodies that are chemically coupled to toxic proteins usually derived from plants or microbes. The antibody targets the toxin moiety to the required cells.

48
Q

inducer

A

A signal molecule that, when bound to a regulatory protein, produces an increase in the expression of a given gene. // A substance of low molecular weight that is bound by a repressor to produce a complex that can no longer bind to the operator; thus, the presence of the inducer turns on the expression of the gene(s) controlled by the operator.

49
Q

innate immunity

A

Host defenses that afford protection against any kind of pathogen. See also adaptive immunity. // The various innate resistance mechanisms that are encountered first by a pathogen, before adaptive immunity is induced, such as anatomical barriers, antimicrobial peptides, the complement system, and macrophages and neutrophils carrying nonspecific pathogen-recognition receptors. Innate immunity is present in all individuals at all times, does not increase with repeated exposure to a given pathogen, and discriminates between groups of similar pathogens, rather than responding to a particular pathogen. Cf. adaptive immunity.

50
Q

interneuron

A

(in′ter-nū′ron) Type of neuron that resides completely within the CNS and coordinates activity between sensory and motor neurons. // Any neuron that is not a sensory or motor neuron; also describes a CNS neuron whose axon does not leave the structure in which it resides.

51
Q

J chain

A

A polypeptide in polymeric immunoglobulins. // Small polypeptide chain made by B cells that attaches to polymeric immunoglobulins IgM and IgA by disulfide bonds, and is essential for formation of the binding site for the polymeric immunoglobulin receptor.

52
Q

Lactate dehydrogenase

A

The enzyme that interconverts pyruvate and lactate. // An enzyme contained in the glycolytic energy system that converts pyruvate to lactate.

53
Q

lemniscus

A

A tract that meanders through the brain like a ribbon. // (lem-nis′kŭs; pl., lemnisci, -nis′ı̄) Bundle of axons ascending from sensory relay nuclei to the thalamus.

54
Q

Linkage

A

The tendency of different genes to be inherited together because they are located on the same chromosome. // In ligand binding, the conformational coupling between two separate ligand-binding sites on a protein, such that a conformational change in the protein induced by binding of one ligand affects the binding of a second ligand.

55
Q

long-term depression (LTD)

A

A long-lasting decrease in the effectiveness of synaptic transmission that follows certain types of conditioning stimulation. // A long-lasting (hours or more) decrease in the sensitivity of certain synapses in the brain triggered by NMDA receptor activation. As the opposing process to long-term potentiation, it is thought to be involved in learning and memory.

56
Q

Maple syrup urine disease

A

An inborn error of branched-chain amino acid metabolism, causing mental and neurological deficits. // An inborn error of metabolism where the branched-chain amino acids are unable to be catabolized due to a defect in the enzyme branchedchain a-keto acid dehydrogenase complex. The inability to degrade the amino acids results in the accumulation of ketoacids in tissues and plasma, which leads to a number of brain-related disorders.

57
Q

Metagenomic analysis

A

Sequencing of samples recovered directly from the environment, and containing many genomes. (Chapter 1) // Nucleic acid sequencing of samples recovered directly from the environment, and comprising multiple genomes. (Chapter 10)

58
Q

microelectrode

A

A piece of fine glass tubing, pulled to an even finer tip, that is used to inject electric current into cells or to study the intracellular concentrations of common inorganic ions (such as H+, Na+, K+, Cl–, and Ca2+) in a single living cell by insertion of its tip directly into the cell interior through the plasma membrane. // A probe used to measure the electrical activity of cells. Microelectrodes have a very fi ne tip and can be fashioned from etched metal or glass pipettes filled with electrically conductive solutions.

59
Q

Molecular mimicry

A

Sequence similarities between viral peptides and self-peptides that result in the cross-activation of autoreactive T or B cells by virus-derived peptides. (Chapters 5 and 8) // The similarity between some pathogen antigens and host antigens, such that antibodies and T cells produced against the former also react against host tissues. This similarity may be the cause of some autoimmunity.

60
Q

multidrug resistance (MDR) protein

A

Type of ABC transporter protein that can pump hydrophobic drugs (such as some anticancer drugs) out of the cytoplasm of eukaryotic cells.

61
Q

NAD, NADP (nicotinamide adenine dinucleotide, nicotinamide adenine dinucleotide phosphate)

A

Two cosubstrates that accept or donate electrons (+ proton) in many dehydrogenase reactions. // Nicotinamide-containing coenzymes functioning as carriers of hydrogen atoms and electrons in some oxidation-reduction reactions.

62
Q

Neuraminidase

A

An enzyme present on the surface of viral particles that cleaves the bond holding the newly formed viral particles to host cells. // An influenza virus protein that cleaves sialic acid from host cells to allow viral detachment, a common antigenic determinant, and target of antiviral neuraminidase inhibitors.

63
Q

Nitrous acid

A

HNO2, a potent chemical mutagen. // The acid form of the nitrites; causes mutations by deaminating DNA bases.

64
Q

nonsense codon

A

A codon that does not encode any amino acid. // A codon that does not specify an amino acid, but signals the termination of a polypeptide chain.

65
Q

oligodendrocyte

A

(ol′i-gō-den′drō- sı̄t) Category of large glial cells in the central nervous system that wrap around and insulate axons. // Glial cell in the vertebrate central nervous system that forms a myelin sheath around axons. Compare Schwann cell.

66
Q

organic chemistry

A

The study of carbon-based compounds.

67
Q

Osteoporosis

A

Brittle, fragile bones in elderly people. // (os′tē-ō-pō-rō′sis) Medical condition characterized by decreased bone mass and increased susceptibility to fracture.

68
Q

Paralogous genes

A

Homologous genes present within a species (cf. Homologous genes).

69
Q

Pellagra

A

Niacin deficiency; symptoms include dermatitis, diarrhea, and dementia. // Disease caused by a niacin deficiency in which diarrhea, dermatitis, dementia, and, eventually, death, can result.

70
Q

persistent viral infection // persistent infection

A

A viral infection that is not cleared by the combined actions of the innate and adaptive immune response. // A disease process that occurs gradually over a long period.

71
Q

photolyase

A

An enzyme that splits thymine dimers in the presence of visible light. // Repair enzyme that reverse cross-linking between DNA bases by the use of blue and UV-Alight.

72
Q

phytoplankton

A

Free-floating photoautotrophs. // Autotrophic members of plankton community.

73
Q

polar covalent bond

A

A covalent bond between two atoms with significantly different electronegativities, resulting in an uneven distribution of electron density. // A covalent bond in which the electron distribution between atoms is unsymmetrical.

74
Q

polysome

A

A complex of an mRNA molecule and two or more ribosomes; also called polyribosome. polyunsaturated fatty acid See PUFA. // An mRNA bound to multiple ribosomes that are synthesizing proteins from the mRNA template. (Chapter 11)

75
Q

power

A

The quick application of force against resistance. This unit of work is expressed per unit of time (i.e., power = work/time) and is often considered a factor of intensity. It may also be calculated by multiplying force 3 displacement. // Th e probability that a meaningful diff erence or eff ect can be detected, if one were to occur. (Chapter 1)

76
Q

propeptides

A

Inactive precursor form of a polypeptide or peptide, which requires proteolytic processing to produce the active peptide. // The N- and C-terminal extensions in procollagen.

77
Q

Quadrupole (Q)MS // Quadrupole mass analyzer

A

Mass analyzer in mass spectrometry separating ions by their transmission, traversing an electrodynamic field. // A type of mass spectrometer that uses four cylindrical rods to create an oscillating electrostatic ield. Ion trajectories are determined by their m/z ratios. At a given ield, only one m/z value will make it through the quadrupole region—the others will crash into the quadrupole rods or the walls of the instrument and never reach the detector.

78
Q

receptor serine/threonine kinase

A

Cell-surface receptor with an extracellular ligand-binding domain and an intracellular kinase domain that phosphorylates signaling proteins on serine or threonine residues in response to ligand binding. The TGFβ receptor is an example. // Receptors that have an intrinsic serine/threonine kinase activity in their cytoplasmic tails.

79
Q

reduction division

A

Phase of meiosis in which the maternal and paternal chromosomes of the bivalent separate (cf. Equational division). // The process in meiosis I where maternal and paternal pairs of homologous chromosomes are separated and move to opposite ends of the cell.

80
Q

replisome

A

The multiprotein complex that promotes DNA synthesis at the replication fork. // The complete replication apparatus—present at a replication fork—that carries out the semiconservative replication of DNA.

81
Q

response element

A

A region of DNA, near (upstream from) a gene, that is bound by specific proteins that influence the rate of transcription of the gene. // A regulatory DNA sequence that mediates the effects of a hormone, second messenger, nutrient, or metabolite on gene transcription.

82
Q

ribose

A

A five-carbon monosaccharide that serves as a component of RNA, DNA, and ATP. // A five-carbon sugar that is part of ribonucleotide molecules and RNA.

83
Q

Satellite band

A

A band formed by DNA in a density gradient that is smaller than, and distinct from, main-band DNA. A satellite band contains repeated DNA sequences called satellite DNAs with lower or higher densities than main-band DNA.

84
Q

second law of thermodynamics

A

A law stating that for any spontaneous process, the entropy of the universe increases (ΔSuniv > 0). // The law stating that, in any chemical or physical process, the entropy of the universe tends to increase.

85
Q

serine protease

A

Type of protease that has a reactive serine in the active site. // One of four major classes of proteases, featuring a reaction mechanism in which an active-site Ser residue acts as a covalent catalyst.

86
Q

signal peptidase

A

Enzyme that removes a terminal signal sequence from a protein once the sorting process is complete. // An enzyme in the endoplasmic reticulum that cleaves off the signal sequence.

87
Q

site-specific recombination

A

A type of genetic recombination that occurs only at specific sequences. // Exchange of DNA sequences at short DNA sequences that are specifically recognized by proteins that catalyze recombination. (Chapter 9)

88
Q

specific rotation, [α]D

A

The rotation, in degrees, of the plane of plane-polarized light (D-line of sodium) by an optically active compound at 25 8C, with a specified concentration and light path. // The optical rotation of a chiral compound under standard conditions.

89
Q

spontaneous mutation

A

A mutation that occurs without a mutagen. // A mutation that occurs without a known cause (cf. Induced mutation).

90
Q

stimulatory G protein (Gs)

A

A trimeric regulatory GTP-binding protein that, when activated by an associated plasma membrane receptor, stimulates a neighboring membrane enzyme such as adenylyl cyclase. Its effects oppose those of Gi. // G protein that, when activated, activates the enzyme adenylyl cyclase and thus stimulates the production of cyclic AMP. See also G protein.

91
Q

suppressor mutation

A

A mutation that totally or partially restores a function lost by a primary mutation; located at a site different from the site of the primary mutation. // A mutation that partially or completely cancels the phenotypic effect of another mutation.

92
Q

tau // Tau protein

A

Abnormal protein in the neurofibrillary tangles present in Alzheimer’s disease. // An axonal protein that is misfolded in many neurodegenerative diseases.

93
Q

testosterone

A

The predominant male sex hormone, which is produced in the testes in men and the adrenal cortex and ovaries in women. Testosterone is often used as an index of anabolism or the anabolic status of the body. // A steroid hormone that induces the development of male characteristics.

94
Q

TH2 cell

A

A type of effector helper T cell that helps activate B cells to produce antibodies, to undergo somatic hypermutation, and switch the class of immunoglobulin produced.

95
Q

tocopherol

A

Any of several forms of vitamin E. topoisomerases Enzymes that introduce positive or negative supercoils in closed, circular duplex DNA. // A class of vitamin E molecules with saturated phytyl side chains.

96
Q

Transformation (cancerous)

A

The conversion of eukaryotic cells growing in culture to a state of uncontrolled cell growth (similar to tumor cell growth).

97
Q

transmembrane protein

A

Membrane protein that extends through the lipid bilayer, with part of its mass on either side of the membrane.

98
Q

two-dimensional gel electrophoresis

A

Technique combining two different separation procedures—separation by charge (isoelectric focusing) in the first dimension, then separation by size in a direction at a right angle to that of the first step—to resolve up to 2000 proteins in the form of a two-dimensional protein map. // Analytical method most frequently used in proteomics for separation of proteins in an electric field according to two basic protein properties, their charge depending on the amino acid composition and their size depending on the number of amino acids.

99
Q

urinalysis

A

(ū-ri-nal′i-sis) Analysis of the urine to help assess the state of a person’s health. // Semiquantitative determination of urinary metabolites.

100
Q

variable region

A

Region of an immunoglobulin or T cell receptor polypeptide chain that is the most variable and contributes to the antigen-binding site. // The region of an immunoglobulin or T-cell receptor that is formed of the amino-terminal domains of its component polypeptide chains. These are the most variable parts of the molecule and contain the antigenbinding sites.

101
Q

Vitamin K

A

A fat-soluble vitamin that is required for the synthesis of blood clotting factors. // Accepted designation for activity preventing hypoprothrombinemic hemorrhage shared by related naphthoquinones

102
Q

wobble

A

The relatively loose base pairing between the base at the 3’ end of a codon and the complementary base at the 5’ end of the anticodon. // Freedom of base-pairing between the third codon base and the first anticodon base.

103
Q

zwitterion

A

A dipolar ion with spatially separated positive and negative charges. // A molecule that contains at least one positive and at least one negative charge.