BIO - TERMS - FREQUENCY > 1 PT 2 Flashcards

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1
Q

3’ end

A

The end of a nucleic acid chain with a free hydroxyl group at C3’. // The end of a nucleic acid that lacks a nucleotide bound at the 3’ position of the terminal residue.

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2
Q

5’ end

A

The end of a nucleic acid chain with a free hydroxyl group at C5’. // The end of a nucleic acid that lacks a nucleotide bound at the 5’ position of the terminal residue.

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3
Q

acrodermatitis enteropathica

A

A disease caused by an inherited defect of intestinal zinc absorption. // A recessive genetic disorder in which zinc uptake by the small intestine is markedly diminished due to a defect in the transporter ZIP4 protein, leading to signs of zinc deficiency.a

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4
Q

adhesin

A

A carbohydrate-specific binding protein that projects from prokaryotic cells; used for adherence, also called a ligand. // Specific proteins or protein complexes of pathogenic bacteria that recognize and bind cell-surface molecules on the host cells to enable tight adhesion and colonization of tissues.

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5
Q

Alkalosis

A

Abnormally high blood pH. // (al-kă-lō′-sis) Condition in which the pH of arterial blood is above 7.45.

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6
Q

Ames test

A

A procedure using bacteria to identify potential carcinogens. // A simple bacterial test for carcinogenicity, based on the assumption that carcinogens are mutagens.

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7
Q

anaphase

A

(1) Stage of mitosis during which sister chromatids separate and move away from each other. (2) Anaphase I and II: stages of meiosis during which chromosome homolog pairs separate (I), and then sister chromatids separate (II). // The stage of mitosis or meiosis during which the daughter chromosomes pass from the equatorial plate to opposite poles of the cell (toward the ends of the spindle). Anaphase follows metaphase and precedes telophase.

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8
Q

antigen-binding site

A

A site on an antibody that binds to an antigenic determinant. // The site at the tip of each arm of an antibody that makes physical contact with the antigen and binds it noncovalently. The antigen specificity of the site is determined by its shape and the amino acids present.

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9
Q

Apoprotein

A

The polypeptide component of a conjugated protein. // The protein portion of a protein, exclusive of any organic or inorganic cofactors or prosthetic groups that might be required for activity.

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10
Q

ATP synthase (F1Fo ATPase)

A

An enzyme complex that forms ATP from ADP and phosphate during oxidative phosphorylation in the inner mitochondrial membrane or the bacterial plasma membrane, and during photophosphorylation in chloroplasts. // Transmembrane enzyme complex in the inner membrane of mitochondria and the thylakoid membrane of chloroplasts. Catalyzes the formation of ATP from ADP and inorganic phosphate during oxidative phosphorylation and photosynthesis, respectively. Also present in the plasma membrane of bacteria.

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11
Q

Autosome

A

Non–sex chromosome. // Any chromosome that is not a sex chromosome.

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12
Q

Basal metabolic rate

A

The energy consumed in the absence of physical activity. // An animal’s rate of oxygen consumption when at complete rest, long after a meal.

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13
Q

biofilm

A

A microbial community that usually forms as a slimy layer on a surface. // Any group of microorganisms in which cells stick to each other on an interface. These adherent cells are frequently embedded within a self-produced matrix of extracellular polymeric substances (EPS).

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14
Q

bonding MO // bonding orbital

A

A molecular orbital that is lower in energy than the atomic orbitals from which it is formed. // A molecular orbital that is lower in energy than any of the atomic orbitals from which it was formed.

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15
Q

Capping

A

The addition of m 7 G via a 5’ –5’ phosphodiester bond to the 5 ends of cellular and viral transcripts made in eukaryotic cells. (Chapter 10) // A process occurring in the nucleus in which the modified purine 7-methylguanosine is added to the 5ʹ phosphate of the first nucleotide of the RNA transcript.

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16
Q

carotene

A

Dietary precursors of vitamin A in vegetables. // (kar′ō-tēn) Class of yellow-red pigments widely distributed in plants and animals.

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17
Q

cerebroside

A

Sphingolipids containing a monosaccharide. // Sphingolipid containing one sugar residue as a head group.

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18
Q

chemotroph

A

An organism that uses oxidation-reduction reactions as its primary energy source. // An organism that obtains energy by metabolizing organic compounds derived from other organisms.

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19
Q

cholinergic

A

(kol-in-er′jik) Relating to neurons that use acetylcholine as their neurotransmitter. // Describing neurons or synapses that produce and release acetylcholine.

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20
Q

clonal deletion

A

The elimination of B and T cells that react with self. // The elimination of immature lymphocytes when they bind to self antigens, which produces tolerance to self as required by the clonal selection theory of adaptive immunity. Clonal deletion is the main mechanism of central tolerance and can also occur in peripheral tolerance.

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21
Q

Competitive inhibition

A

Inhibition by an agent that binds noncovalently to the active site of the enzyme. // A type of enzyme inhibition reversed by increasing the substrate concentration; a competitive inhibitor generally competes with the normal substrate or ligand for a protein’s binding site.

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22
Q

Conjugative R plasmid

A

A circular DNA molecule that can be transferred from one bacterium to another during conjugation.

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23
Q

coordination number (in a crystal structure)

A

The number of atoms with which each atom in a crystal lattice is in direct contact.

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24
Q

cyclin-dependent kinase (Cdk)

A

Positive regulators of cell cycle progression. // Protein kinase that has to be complexed with a cyclin protein in order to act. Different cyclin–Cdk complexes trigger different steps in the cell-division cycle by phosphorylating specific target proteins.

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25
Q

dehydration

A

A loss of body fluids in excess. // The loss of water from an alcohol to yield an alkene.

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26
Q

Dialysis

A

Removal of small molecules and inorganic ions through a semipermeable membrane. // Removal of small molecules from a solution of a macromolecule by their diffusion through a semipermeable membrane into a suitably buffered solution.

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27
Q

dispersion force

A

Noncovalent inter actions between molecules that arise because of constantly changing electron distributions within the molecules. // An intermolecular force (also referred to as London force) exhibited by all atoms and molecules that results from fluctuations in the electron distribution.

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28
Q

DNA supercoiling

A

The coiling of DNA upon itself, generally as a result of bending, underwinding, or overwinding of the DNA helix. // A conformation with loops or coils that DNA adopts in response to superhelical tension; conversely, creating various loops or coils in the helix can create such tension.

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29
Q

dysbiosis

A

An imbalance of microbiome in the human body (such as the gastrointestinal tract), leading to adverse health conditions. // Altered balance of microbial species comprising the microbiota resulting from a variety of causes (e.g., antibiotics, genetic disorders) and frequently associated with outgrowth of pathogenic organisms such as Clostridium difficile.

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30
Q

electrical synapse

A

A synapse in which electrical current flows directly from one cell to another via a gap junction. // (sin′aps) Junction between two communicating cells. Electrical signal moves across this type of synapse through gap junctions.

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31
Q

Elongation factors

A

Soluble proteins that are required for polypeptide chain elongation. // (1) Proteins that function in the elongation phase of eukaryotic transcription. (2) Specific proteins required in the elongation of polypeptide chains by ribosomes.

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32
Q

energy

A

Capacity to do work.

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33
Q

ester

A

A class of compounds containing the -CO2R functional group. // A family of organic compounds with the general structure R—COO—R.

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34
Q

factor H binding protein (fHbp) // factor H

A

A protein produced by the pathogen Neisseria meningitidis that recruits factor H to its membrane, thereby inactivating C3b deposited on its surface, and evading destruction by complement. // Complement-regulatory protein in plasma that binds C3b and competes with factor B to displace Bb from the convertase.

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35
Q

Fibronectin

A

A glycoprotein that binds to cell surfaces and extracellular matrix constituents. // Extracellular matrix protein involved in adhesion of cells to the matrix and guidance of migrating cells during embryogenesis. Integrins on the cell surface are receptors for fibronectin.

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36
Q

Flux (J)

A

In pyrometallurgy, material that reacts with the gangue to form a substance with a low melting point. // The rate of a permeant crossing the skin (or entering the systemic circulation). It is given in units of mass per area per time (usually mg/cm2 per hour).

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37
Q

G1 phase

A

The time between mitosis and S phase. // Gap 1 phase of the eukaryotic cell-division cycle, between the end of mitosis and the start of DNA synthesis.

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38
Q

ganglion

A

(gang′glē-on; pl., ganglia, -glē-ă) Group of neuron cell bodies in the peripheral nervous system. // A collection of neurons in the peripheral nervous system. Plural: ganglia.

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39
Q

geometric isomers

A

Isomers related by rotation about a double bond; also called cis and trans isomers. // For complex ions, isomers that result when the ligands bonded to the metal have a different spatial arrangement.

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40
Q

glycoconjugate

A

A compound containing a carbohydrate component bound covalently to a protein or lipid, forming a glycoprotein or glycolipid. // A molecule in which a carbohydrate is linked through its anomeric center to another biological molecule such as a lipid or protein.

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41
Q

graft-versus-host (GVH) disease // graft-versus-host disease (GVHD)

A

A condition that occurs when a transplanted tissue has an immune response to the tissue recipient. // An attack on the tissues of the recipient by mature T cells in a bone marrow graft from a nonidentical donor, which can cause a variety of symptoms; sometimes these are severe.

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42
Q

gyrus

A

(jı̄′rŭs; pl., gyri, -rı̄) Elevated fold of cerebral cortex. // A bump or bulge lying between the sulci of the cerebrum. Plural: gyri.

43
Q

Hemophilia

A

A group of inherited clotting disorders; the most common is factor VIII deficiency. // A bleeder’s disease; tendency to bleed freely from even a slight wound; hereditary condition dependent on a sex-linked recessive gene.

44
Q

homeobox

A

A conserved DNA sequence of 180 base pairs that encodes a protein domain found in many proteins that play a regulatory role in development. // A DNA sequence found in several genes that are involved in the specification of organs in different body parts in animals; characteristic of genes that influence segmentation in animals. The homeobox corresponds to an amino acid sequence in the polypeptide encoded by these genes; this sequence is called the homeodomain.

45
Q

hybridoma

A

A cell made by fusing an antibody-producing B cell with a cancer cell. // Hybrid cell line generated by fusion of a tumor cell and another cell type. Monoclonal antibodies are produced by hybridoma lines obtained by fusing antibody-secreting B cells with cells of a B lymphocyte tumor.

46
Q

hyperacute graft rejection // hyperacute rejection

A

Very rapid rejection of transplanted tissue, usually in the case of tissue from nonhuman sources. // Immediate rejection reaction caused by preformed natural antibodies that react against antigens on the transplanted organ. The antibodies bind to endothelium and trigger the blood-clotting cascade, leading to an engorged, ischemic graft and rapid death of the organ.

47
Q

Imaginal disc

A

A mass of cells in the larvae of Drosophila and other holometabolous insects that gives rise to a particular adult organ such as an antenna, eye, or wing. // Group of cells that are set aside, apparently undifferentiated, in the Drosophila embryo and which will develop into an adult structure, e.g., eye, leg, wing. Overt differentiation occurs at metamorphosis.

48
Q

Imprinting

A

Silencing of specific genes in the germline, usually by DNA methylation. // A process that alters the state of a gene without altering its nucleotide sequence; often associated with methylation of specific nucleotides in the gene. The altered state is established in the germ line and is transmitted to the offspring where it may persist throughout the offspring’s life. A gene that has been altered in this way is said to have been imprinted.

49
Q

Induction

A

The process of turning on the expression of a gene or set of genes by an inducer. // An increase in the expression of a gene in response to a change in the activity of a regulatory protein.

50
Q

Innate response

A

Th e fi rst line of immune defense; able to function continually in the host without prior exposure to the invading pathogen. Th is elaborate system includes cytokines, sentinel cells, complement, and natural killer cells. (Chapters 2 and 3)

51
Q

ion product constant for water (Kw) // ion product of water (KW)

A

The product of the concentrations of H and OH in pure water Kw 5 [H1][OH2] 5 1 3 10214 at 25 8C. // The equilibrium constant for the autoionization of water; sometimes called the dissociation constant for water.

52
Q

Jaundice

A

Yellow discoloration of skin and sclera in patients with hyperbilirubinemia. // A yellowish skin color resulting from the liver ‘s inability to effectively process bilirubin.

53
Q

Lactose intolerance

A

Digestive disturbances after the ingestion of milk or milk products, caused by low activity of intestinal lactase. // Symptoms such as bloating, cramping, and diarrhea experienced by people who produce an insufficient amount of lactase.

54
Q

Leptin

A

A polypeptide hormone from overfed adipose cells that reduces appetite. // A protein hormone released by adipocytes (fat cells) that communicates with neurons of the arcuate nucleus of the hypothalamus.

55
Q

lipid bodies

A

Storage organelles rich in neutral lipids within the cytoplasm. // Cell organelles consisting of a triacylglycerol core surrounded by a monolayer of phospholipids and protein.

56
Q

long-term potentiation (LTP)

A

A long-lasting enhancement of the effectiveness of synaptic transmission that follows certain types of conditioning stimulation. // Long-lasting increase (days to weeks) in the sensitivity of certain synapses in the brain, induced by a short burst of repetitive firing in the presynaptic neurons. (Figure 11–44)

57
Q

Maternal inheritance

A

Inheritance controlled by extrachromosomal (that is, cytoplasmic) factors that are transmitted through the egg. // A form of inheritance observed when following mitochondria in animals and plants, where mitochondrial DNA is inherited only through the female germ line.

58
Q

Metallothionein

A

A protein that binds heavy metals. // A polypeptide produced by the small intestine as well as other tissues, such as the liver and kidney, that functions to bind trace minerals.

59
Q

Microtubule Organizing Center (MTOC)

A

Region in a cell, such as a centrosome or a basal body, from which microtubules grow. // A region in a eukaryotic cell that generates the microtubules used during cell division. In animal cells, the MTOC is associated with distinct organelles called centrosomes.

60
Q

Molecular orbital (Mo) theory

A

A description of covalent bond formation as resulting from a mathematical combination of atomic orbitals (wave functions) to form molecular orbitals. // An advanced model of chemical bonding in which electrons reside in molecular orbitals delocalized over the entire molecule. In the simplest version, the molecular orbitals are simply linear combinations of atomic orbitals.

61
Q

Mutant

A

A cell or individual organism that shows a change brought about by a mutation; a changed gene. // An organism carrying a genetic difference from the wild type, sometimes with detrimental effects on gene function.

62
Q

naive cell // naive T cells

A

In immunology: a T or B lymphocyte that proliferates and differentiates into an effector cell or memory cell when it encounters its specific foreign antigen for the first time. // Lymphocytes that have never encountered their specific antigen and thus have never responded to it, as distinct from effector and memory lymphocytes.

63
Q

neuromuscular junction

A

A chemical synapse between a spinal motor neuron axon and a skeletal muscle fiber. // Specialized chemical synapse between an axon terminal of a motor neuron and a skeletal muscle cell.

64
Q

NMDA receptor

A

A subtype of glutamate receptor; a glutamate- gated ion channel that is permeable to Na+, K+, and Ca²⁺. Inward ionic current through the N-methyl-D-aspartate receptor is voltage dependent because of a magnesium block at negative membrane potentials. // Subclass of glutamate-gated ion channel in the mammalian central nervous system critical for longterm potentiation and long-term depression. NMDA-receptor channels are doubly gated, opening only when glutamate is bound to the receptor and, simultaneously, the membrane is strongly depolarized.

65
Q

norepinephrine (NE)

A

A catecholamine neurotransmitter synthesized from dopamine; also called noradrenaline. // (nōr-ep-i-nef′rin) Neurotransmitter released by the sympathetic nervous system; hormones released from adrenal medulla.

66
Q

oligonucleotide

A

Short segments of DNA. // A short polymer of nucleotides (usually fewer than 50).

67
Q

organic compound

A

A molecule that contains carbon and hydrogen. // A compound composed of carbon and hydrogen and possibly a few other elements, including nitrogen, oxygen, and sulfur.

68
Q

oxidizing agent (oxidant)

A

The acceptor of electrons in an oxidation-reduction reaction. // A substance that causes the oxidation of another substance; an oxidizing agent gains electrons and is reduced.

69
Q

paralogs

A

Genes or proteins present in the same species that possess a clear sequence and functional relationship to each other. // Genes or proteins that are similar in sequence because they are the result of a gene duplication event occurring in an ancestral organism. Those in two different organisms are less likely to have the same function than are orthologs. Compare orthologs.

70
Q

Penetration

A

Entry into the tissue. Penetration does not necessarily require the molecules to pass out of the tissue. // The phenomenon of some higher-level atomic orbitals having significant amounts of probability within the space occupied by orbitals of lower energy level. For example, the 2s orbital penetrates into the 1s orbital.

71
Q

persister cells // persisters

A

Bacterial cells in a population that avoid being killed by antibiotics because they are dormant, not because they are mutants. // Multidrug tolerance is caused by a small subpopulation of microbial cells termed persisters. Persisters are notmutants but rather are dormant cells that can survive the antimicrobial treatments that kill the majority of their genetically identical siblings. Persister cells have entered a non- or extremely slow-growing physiological state, which makes them insensitive (refractory or tolerant) to the action of antimicrobial drugs.

72
Q

photon (quantum)

A

The ultimate unit (a quantum) of light energy. // The smallest possible packet of electromagnetic radiation with an energy equal to hv.

73
Q

pi (π) bond

A

The bond that forms between two p orbitals that overlap side to side. // The covalent bond formed by sideways overlap of atomic orbitals. For example, carbon–carbon double bonds contain a π bond formed by sideways overlap of two p orbitals.

74
Q

polar molecule

A

A molecule with an unequal distribution of charges. // Molecules containing polar covalent chemical bonds; hydrophilic.

75
Q

polytene chromosome

A

Giant chromosome in which the DNA has undergone repeated replication and the many copies have stayed together in precise alignment. // Giant chromosomes produced by interphase replication without division and consisting of many identical chromatids arranged side by side in a cablelike pattern.

76
Q

precipitation reaction

A

A reaction between soluble antigens and multivalent antibodies to form visible aggregates. // A reaction in which a solid, insoluble product forms when two solutions are mixed.

77
Q

proprioceptor

A

(prō′prē-ō-sep′ter) Sensory receptor within joints, muscles, and tendons that detect body and limb movements. // A sensory receptor from the muscles, joints, and skin that contributes to proprioception.

78
Q

quantum

A

The ultimate unit of energy.

79
Q

Recessive

A

A term applied to one member of an allelic pair lacking the ability to manifest itself when the other or dominant member is present. // Determining the phenotype in the homozygous but not the heterozygous state.

80
Q

referred pain

A

Pain sensed, not from the organ, but from an unrelated region of the body. // Pain that is perceived as coming from a site other than its true origin. Nociceptor activation within visceral organs is typically perceived as pain originating in skin or skeletal muscle.

81
Q

repressible enzyme

A

In bacteria, an enzyme whose synthesis is inhibited when its reaction product is readily available to the cell. // An enzyme whose synthesis is diminished by a regulatory molecule.

82
Q

restriction enzyme

A

An enzyme that cuts double-stranded DNA at specific sites between nucleotides. // An endonuclease that recognizes a specific short sequence in DNA and cleaves the DNA molecule at or near that site.

83
Q

rickets

A

A bone condition, most often seen in children, resulting from vitamin D deficiency that is associated with a failure of growing bone to mineralize. As the epiphyseal cartilage of bone continues to grow, it is not properly replaced with matrix and hydroxyapatite. This results in a bowing of longer weight-bearing bones such as the femur, tibia, and fibula of the legs, deformations of the knee region, and curvature of the spine. // Bone demineralization caused by vitamin D deficiency in children.

84
Q

satellite DNA

A

Highly repeated, nontranslated segments of DNA in eukaryotic chromosomes; most often associated with the centromeric region. Its function is unknown. Also called simple-sequence DNA. // An electron microscope that provides three-dimensional views of the specimen magnified 1000–10,000*. // A component of the genome that can be isolated from the rest of the DNA by density-gradient centrifugation. Usually, it consists of short, highly repetitious sequences.

85
Q

secondary immune response

A

The adaptive immune response that occurs in response to a second or subsequent exposure to an antigen. The response is more rapid in onset and stronger than the primary immune response. // The immune response that occurs in response to a second exposure to an antigen. In comparison with the primary response, it starts sooner after exposure, produces greater levels of antibody, and produces class-switched antibodies. It is generated by the reactivation of memory lymphocytes.

86
Q

seroconversion

A

A change in a person’s response to an antigen in a serological test. // The phase of an infection when antibodies against the infecting agent are first detectable in the blood.

87
Q

signal peptide

A

The short N-terminal peptide sequence responsible for directing newly synthesized proteins into the secretory pathway. // A short sequence (generally hydrophobic) that directs nascent proteins to the endoplasmic reticulum. The signal may be removed, or retained as a transmembrane domain. (Chapter 12)

88
Q

skeletal muscle

A

A type of striated muscle that is under voluntary control and that functions to move bones around joints; derived from mesodermal somites. // One of three types of muscle; skeletalmuscle is controlled voluntarily by the central nervous system. skeleton A rigid framework that provides structure and protection to an organism.

89
Q

specificity

A

Percentage of false positive results given by a diagnostic test. // The ability of an enzyme or receptor to discriminate among competing substrates or ligands.

90
Q

SRC

A

A (proto)oncogene coding for a nonreceptor tyrosine protein kinase.

91
Q

stimulus

A

Change in a regulated variable; event that provokes a cellular response. // Any exogenous factor that can be perceived by a plant and elicits a physiological response.

92
Q

susceptibility

A

The lack of resistance to a disease. // Th e property of a cell that enables it to be infected by a particular virus (e.g., the presence of a viral receptor[s] on the cell surface). (Chapter 2)

93
Q

Tay-Sachs disease

A

A lethal autosomal recessive disorder in humans characterized by neurological degeneration and death in early childhood. The disease is caused by the absence of an enzyme called hexosaminidase A. // A lipid storage disease caused by deficiency of a ganglioside-degrading lysosomal enzyme.

94
Q

tetanus

A

(tet′ă-nŭs) Sustained contraction that may lead to spastic paralysis. // A type of repetitive stimulation.

95
Q

thalamus

A

(thal′ă-mŭs) Region of the brain in the diencephalon involved in motor control and relaying sensory information to higher brain centers. // The dorsal part of the diencephalon, highly interconnected with the cerebral neocortex.

96
Q

Toll

A

A transmembrane receptor protein. On the ventral side of the Drosophila egg membrane, its activation controls the distribution of Dorsal, a transcription regulator of the NFκB family. // Receptor protein in Drosophila that activates the transcription factor NFκB, leading to the production of antimicrobial peptides.

97
Q

Transformation (genetic)

A

Genetic alteration of an organism brought about by the incorporation of foreign DNA into cells.

98
Q

transposition (transpositional recombination)

A

The movement of a gene or set of genes from one site in the genome to another. // Movement of a DNA sequence from one genome site to another.

99
Q

tyrosinase

A

Enzyme in melanin synthesis pathway and frequently a tumor rejection antigen in melanoma. // An enzyme in melanocytes that is required for melanin synthesis.

100
Q

Uronic acid

A

A monocarboxylic acid formed by oxidizing the -CH2OH end of an aldose without affecting the -CHO end. // A class of sugar acids with both carbonyl and carboxylic acid functional groups. They are sugars in which the terminal carbon’s hydroxyl group has been oxidized to a carboxylic acid.

101
Q

vasodilation

A

(vā′sō-dı̄-lā′shŭn) Widening of blood vessel lumen. // Dilation or enlargement of blood vessels.

102
Q

vitreous humor

A

A clear gelatinous fluid within the posterior cavity of the eye; this permanent fluid is formed during embryologic development // The jellylike substance filling the eye between the lens and the retina.

103
Q

work (w)

A

This unit is calculated by multiplying force by displacement. // The action of a force through a distance.

104
Q

α oxidation

A

An alternative path for the oxidation of β-methyl fatty acids in peroxisomes. // A minor catabolic pathway that shortens fatty acids by one carbon.