COVID 19 And miscallenous Viruses Flashcards
Family and genus of Coronavirus
Family - Coronaviridae
Genus - Beta coronavirus
Features of Coronavirus
Non segmented
Positive sense RNA
ssRNA
Structure present in Coronavirus
Spike (S1 and S2) - helps in attachment
Nucleocapsid (N)
Membrane (M)
Envelope (E)
Coronavirus attaches to which receptors and location
1) Spike proteins attaches on ACE2 Receptors
Maximally present in Lungs (type 2 pneumocytes), GIT, Heart, Kidney
Activation of spike protein in coronavirus happens through
TMPRSS2
Pathogenesis of COVID 19
Attachment - Endocytosis - Uncoating - Viral Replication - Viral assembly and Release
When Max shedding in COVID-19 occurs
Occurs 5-8 hrs before onset of symptoms
Clinical features of COVID-19
Fever
Dyspnea
Dry cough
Shortness of breath
Loss of smell and taste
GI Complaints
Myalgia
Radiological findings seen in COVID-19
Multifocal ground glass opacities
Consolidation
Pavement appearance (multiple GGO’s with septal thickening)
Reverse halo sign
Collection of COVID-19 sampe
Upper respiratory specimen - Nasopharyngeal and oropharyngeal swab
Lower resp specimen - BAL, ET Aspirate, sputum
Gold standard method of diagnosis of COVID-19 and turn around time
Real time RT PCR
Turn around time - 4-6 hrs
Semi confirmatory genes for COVID-19
F gene
N gene
S gene
Confirmatory genes for COVID-19
RdRP gene
ORF1 alpha gene
CBNAAT or True NAAT procedure in case of COVID 19
Portable PCR <30 min
2 steps - E gene screening (semi confirmatory gene) - If +ve - Check RdRP(Confirmatory) - If -ve - RRTPCR
Rapid card test for COVID-19 principle is based on
Immunochromtatography
FELUDA test
Fn Cas9 Editor linked uniform detection assay
Principle - Crispr Cas9
Paper based Test strip
Time <45 min
Reservoir for Arenaviridae family
Rodents
Arenaviridae features
Negative sense RNA
Segmented RNA Virus - 2 segments
Bioterrorism A agent
Sand sprinkled /sandy appearance
Arenaviridae family includes
Lassavirus
Junin virus
Machupovirus
Lymphocytic choriomeningitis virus
Which Arenaviridae family members known to cause Hemorrhagic fever
Lassavirus
Junin virus
Machupovirus
Lymphocytic choriomeningitis virus Causes
Meningitis
Reoviridae family includes
Rotavirus
Rotavirus release which toxin
NSP4 Enterotoxin
Structural protein of Rotavirus
VP 1-4,6,7