Making an Infection Diagnosis Flashcards

1
Q

What would be some reasons clinicians wouldn’t use lab results

A

the speed of progression of infections is much faster than the time taken to generate results
thye do not understand the implications of the data

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2
Q

give me some roles of microbiologist

A
  • provide a clinical consultation service for patients with suspected infection
  • clinical advice on the interpretation of results
  • advice on therapy
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3
Q

What is the usual circle of events

A

Patient doctor interaction - differential diagnosis

  • clinical specimens
  • results
  • informed diagnosis
  • therapy
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4
Q

What processes can be performed to make such a diagnosis

A

Direct examination (of sample)
culture
serology
molecular

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5
Q

Advantages of smear diagnosis

A
  • rapid
  • simple to perform
  • cheap
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6
Q

disadvantages of smear diagnosis

A

not very sensitive
not very specific
requires considerable expertise

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7
Q

What are the different forms of Light microscopy

A

Direct (stool-parasites)
Gram (CSF-bacteria)
Z-N (sputum-TB)
Giemsa (blood-malaria)

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8
Q

what can fluorescent microscopy used to diagnose

A

Respiratory syncytial virus (RSV)

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9
Q

What can electron microscopy be used for

A

virus detection and indeitification

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10
Q

advantages of culture diagnosis

A

more sensitive than smear
allows susceptibility testing
allows rapid presumptive diagnosis
allows detailed identification

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11
Q

Disadvantages of culture diagnosis

A

rendered negative by antibiotics

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12
Q

What is MALDI-TOF used for (advantages)

A

rapid identification of bacteria

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13
Q

Disadvantages of MALDI-TOF

A

Does not provide susceptibilities
delayed by slow growth
no value if presence of antibiotics render culture negative

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14
Q

What can serological diagnosis detect

A
high IgE conc
rising of falling titres
IgM/IgA
Measure avidity (strength) of binding
antigen
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15
Q

List me some examples of serological techniques

A
Agglutination
Precipitation
Complement fixation 
virus neutralisation 
ELISA
RIA
Immunoflurescence
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16
Q

Tell me the algorithm of all possible outcomes

A

this results from parallel IGRA and TST testing

17
Q

examples of molecular techniques

A
DNA hybridisation 
nucleic acid amplification testing:
-PCR
-LCR
-Automated DNA amplification 
-real time PCR
18
Q

Examples of specimens which can be taken

A
UTI:
- midstream urine 
WOUND:
- pus or swab
MENINGITIS:
- CSF and blood
PYREXIA UO:
- blood for culture + serology
PNEUMONIA:
- Sputum
- lavage
- serology
19
Q

What specimens could be collected when a single pathogen is present

A

throat swab (not diphtheria)
infection control screening
Mtb detection

20
Q

What would you use when a few organisms are likely

A

CSF
STI samples
blood

21
Q

What are some specimens with multiple pathogens

A
faeces
abscess pus
LRTI samples
Oral swab
Urine
22
Q

What do we look at when finding evidence for a positive diagnosis

A

sensitivity
specificity
predictive value of a positive and negative test

23
Q

What does sensitivity mean

A

the ability of a test to detect all true positives

equal to the number of positives obtained divided by the total number of positives

24
Q

What does specificity mean

A

ability to identify the number of true negatives

equal to the number of true negatives obtained divided by the number of true negatives

25
Q

How will cultures present when a patient has a virus

A

negative

26
Q

legionella drawback

A

grows slowly and requires specialise medium

27
Q

Mycoplasma pneumoniae drawback

A

requires specialist medium

28
Q

Chlamydia psittaci, Chlamydophyla pneumoniae drawback

A

Obligate intracellular pathogen

29
Q

how long does real time PCR take

A

approximately 2 hours