Metabolism Flashcards
What is metabolism ?
the sum of all chemical reactions in a cell needed to survive , grow and reproduce
How do enzymes catalyse reactions that happen at higher temperatures ?
they lower the activation energy
What happens during catabolic reactions ?
breakdown foodstuffs into smaller molecules
How does catabolism play a dual role ?
energy is released as well as small molecules being released
What happens during anabolic reactions ?
the energy released from catabolism is used to produce new molecules
What is the thermic effect of food ?
a high amount of energy is needed to process the food that the net amount of energy released is small
What is the units for the energy released from food ?
kCal per gram
How do organisms extract energy from food ?
oxidation
What is oxidation ?
the removal of electrons
What is reduction ?
the addition of electrons
In chemical reactions how do reduction and oxidation occur ?
simultaneously
How is energy conserved in reactions ?
the number of electrons is conserved
What can activated carriers store ?
chemical groups
electrons
What do activated carriers do ?
they act as the link between catabolism and anabolism
Energetically favourable reactions ….
… can drive unfavourable reactions
How does NAD store energy ?
in the from of 2 high energy electrons and H atoms
What is the precursor of NAD ?
niacin vit B3
What does NAD deficiency cause ?
pellagra - magneta tongue
What does FAD deficiency cause ?
angular stomatitis
During oxidation what happens to ATP
ADP is turned to ATP
During reduction what happens to ATP ?
ATP is turned to ADP
How is ATP generated ?
in the ETC of substrate level phosphorylation
Which chemical groups can activated carriers hold ?
acetyl
methyl
carboxyl groups
What are the 4 types of enzymatic control ?
allosteric
hormonal
rate limiting step
substrate supply
What is the rate limiting step ?
an irreversible reaction
the enzymes that catalyse the reaction are strictly regulated
What are allosteric effectors ?
they bind away from the active site
they can inhibit/activate enzyme activity
What is product feedback inhibition ?
when the product of the reaction can act on an earlier component to diminish the response
What is hormonal control of enzymes ?
phosphorylation of enzymes that is hormone mediated
enzyme induction - producing more enzyme - transcription and translation levels are effected
Which amino acids are phosphorylated when proteins are phosphorylated ?
serine
tyrosine
threonine
`Which enzyme controls protein phosphorylation ?
protein kinase
protein phosphatase
What does compartmentalisation allow ?
metabolic reactions to be controlled separately
Where does glycogenesis occur ?
cytosol
What are the 3 steps of glycogenesis ?
donor formation
elongation
branching
What enzymes are involved in glycogenesis ?
glycogen synthase
Branching enzyme
What is the activated donor in glycogenesis ?
UDP-glucose
What activates glycogen synthase ?
Glucose 6 Phosphate
ATP
What inhibits glycogen synthase ?
Glucagon
Adrenaline
they phosphorylate glycogen synthase inactivating it
Where does glycogenolysis occur ?
cytosol
What is the first step of glycogenolysis ?
removal of glucose units from glycogen
What happens after glucose 6 phosphate is made ?
in the liver it is converted to glucose by glucose 6 phosphatase
How does debranching happen ?
debranching enzyme removes the distal 3 units
amylo alpha 1,6 glucosidase removes the alpha 1,6 link
this releases free glucose
can be phosphorylated by hexokianse
What are the enzymes involved in glycogenolysis ?
glycogen phosphorylase
glucose 6 phosphatase
debranching enzyme
amylo alpha 1,6 glucosidase
What stimulates glycogen phosphorylase ?
glucagon and adrenaline
they phosphorylate
Describe a phosphorylation cascade ?
the presence of adrenaline or glucagon in tge blood can cause ATP to be converted to cAMP
cAMP activates protein kinase
protein kinase inhibits Glycogen Synthase
protein kinase phosphorylates phosphorylase kinase
phosphorylase kinase activates Glycogen phosphorylase
What are the 2 phases of glycolysis ?
energy investment
energy generation
What are the steps in the energy investment phase ?
Glucose is phosphorylated by hexakinase to glucose 6 phosphate
this isomerises to fructose 6 phosphate
this is converted to fructose 1,6 bisphosphate by phosphofructokinase
this splits into an equilibrium of dihydorxyacetone phosphate and glyceraldehyde 3 phosphate
What are the steps in the energy generation phase ?
glyceraldehyde 3 phosphate changes into 1,3 bisphosphoglycerate
this changes into 3 phosphoglycerate
this then changes into 2 phosphoglycerate
this then turns into phosphoenoylpyruvate in dehydration
this is the turned into pyruvate by pyruvate kinase
What is the yield of glycolysis per every molecule of glucose ?
2 pyruvate
2 net ATP
2 G3P
Where is glucokinase found ?
in the liver
What is the cori cycle for ?
What happens to glucose under anaerobic conditions
What are the steps of the cori cycle ?
Glucose 6 phosphate is converted to Pyruvate (glycolysis)
pyruvate is converted to lactate by lactate dehydrogenase
the lactate is taken to the liver
converted back to Pyruvate
made into the glucose in gluconeogenesis
The glucose made in the cori cycle can be used for what ?
glycolysis
Where does the link reaction happen ?
mitochondrial matrix
What conditions does the link reaction happen under ?
Aerobic
What is the link reaction ?
pyruvate is converted to acetyl coA in an irreverisble oxidative decarboxylation
catbon dioxide comes off
coA comes in
What catalyses the link reaction ?
pyruvate dehydrogenase complex
What is also made in the link reaction ?
NADPH - for biosynthesis
What is substrate level phosphorylation ?
Direct formation of ATP from the phosphorylation of ADP
What is oxidative phosphorylation ?
ATP is formed in the ETC as electrons are transferred from electron carriers to molecular oxygen
Where does the TCA cycle occur ?
mitochondrial matrix
What are the steps in the TCA cycle ?
Acetyl coA condenses with oxaloacetate to form citrate citrate to isocitrate isocitrate to alpha-ketoglutarate alpha- ketoglutarate to succinyl coA succinyl coA to succinate succinate to fumarate fumarate to Malate.
What are the 3 enzymes in the TCA cycle ?
Citrate synthase
isocitrate dehydrogenase
alpha-ketoglutarate dehydrogenase complex
What is also produced in the TCA cycle ?
GDP-GTP-ATP
FAD-FADH2
NAD-NADH
CO2
What are the 2 steps of the pentose phosphate pathway ?
irreversible oxidative phase
reversible non oxidative phase
What is the irreversible oxidative phase ?
glucose 6 P combines with water and 2x NADP
makes ribulose 5 phosphate carbon dioxide and 2xNADPH
What catalyses the irreversible oxidative phase ?
glucose 6 phosphate dehydrogenase
Where does the pentose phosphate pathway occur ?
cytosol
liver
adrenal cortex
mammary glands
What is the reversible non oxidative phase ?
ribulose 5 phosphate can be turned into Glyceraldehyde 3 phosphate
Ribose phosphate to make nucleic acids
fructose 6 phosphate which can isomerise back to glucose 6 phosphate
Where does the pyruvate in gluconeogenesis come from ?
lactate
alanine
What are the steps in gluconeogenesis ?
2 x pyruvate 2 x Oxaloacetate 2 x phosphoenoylpyruvate equlibrium of dihydroxyacetone phosphate and glyceraldehyde 3 phosphate fructose 1,6 bisphosphate furctose 6 phosphate glucose 6 phosphate glucose
What enzymes are involved in gluconeogenesis ?
pyruvate carboxylase
PEP carboxykinase
Fructose 1,6 bisphosphotase
glucose 6 phosphatase
What do amino acids consist of ?
carbon skeletons - ketoacids
to which an amino group can be attached
What is transamination ?
the formation of one amino acid from another by transfer of an alpha amino group
Which enzymes catalyse transamination ?
aminotransferase
Where are aminotransferase enzymes found ?
in the cytosol and the mitochondria
What do aminotransferase enzymes catalyse specifically ?
transfer of an alpha amino group to an alpha ketoacid
What does transamiantion require ?
vitamin b6 - pyridoxine
How is glutamate made via transamination ?
from alpha ketoglutarate which receives an alpha amino group to become glutamate