[30] Next Generation Sequencing Flashcards

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1
Q

What is Next Generation Sequencing (NGS)?

A

A technology that allows for fast and high-throughput sequencing of millions of DNA molecules simultaneously.

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2
Q

NGS - Initials

A

Next Generation Sequencing

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3
Q

What are the key applications of NGS?

A
  • Genome sequencing
  • Transcriptome profiling
  • Detection of epigenetic changes
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4
Q

What is Genome sequencing in the context of NGS?

A

It refers to determining the complete DNA sequence of an organism’s genome.

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5
Q

What is Transcriptome profiling in NGS?

A

It refers to sequencing all the RNA in a cell to analyze the cell’s transcriptome, or the set of all RNA molecules.

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6
Q

What does the detection of epigenetic changes in NGS mean?

A

It refers to identifying changes in gene activity that are not caused by changes in the DNA sequence itself, but by factors like DNA methylation.

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7
Q

How does NGS work?

A

By breaking down the DNA into short fragments and sequencing them simultaneously, then reconstructing the original sequence using bioinformatics.

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8
Q

What is the role of bioinformatics in NGS?

A

To analyze and interpret the vast amount of data generated by NGS.

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9
Q

What are some advantages of NGS over traditional sequencing methods?

A
  • High-throughput
  • Greater speed
  • Lower cost per base of sequence
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10
Q

How is NGS used in personalized medicine?

A

It’s used to identify genetic mutations linked to diseases, which helps tailor treatment to the individual’s genetic makeup.

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11
Q

How does NGS contribute to evolutionary biology?

A

It allows for large-scale comparison of genomes across different species.

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12
Q

How is NGS used in microbiology?

A

It enables sequencing of entire microbial communities directly from environmental samples.

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13
Q

What are some challenges of NGS?

A
  • Need for high computational capacity
  • Managing and storing large volumes of data
  • Interpreting complex results
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14
Q

What is personalized medicine?

A

Medical practice that customizes healthcare to an individual’s genetic makeup.

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15
Q

What is evolutionary biology?

A

The study of the origins and changes in the diversity of life over time.

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16
Q

What is microbiology?

A

The study of microscopic organisms, such as bacteria, viruses, fungi, and protozoa.

17
Q

What is high-throughput sequencing in the context of NGS?

A

A sequencing method that allows for the processing of millions of DNA molecules at the same time.

18
Q

What are some common NGS platforms?

A
  • Illumina
  • Pacific Biosciences
  • Ion Torrent
19
Q

What is the role of Illumina in NGS?

A

It’s a platform known for short-read sequencing technology, used for various applications like whole-genome sequencing.

20
Q

What are Pacific Biosciences and Ion Torrent known for in NGS?

A

They are platforms known for long-read sequencing technology, often used for de novo assembly and detection of structural variations.