XI Chap 9 Biomolecules Flashcards
An elemental analysis on plant tissue, animal tissue or microbial paste would result in what elements?
carbone, hydrogen, oxygen
The elemental analysis on a plant/animal tissue and a piece of earth’s crust would obtain similar elements. T or F?
True
Relative abundance of carbon, hydrogen and oxygen with respect to other elements is higher in ____________
living organisms or Earth’s crust?
living organisms
Describe how to conduct chemical analysis
take any living tissue
grind it in trichloroacetic acid –> thick slurry
strain using cheesecloth/cotton -> examine the filtrate for organic compounds
More technically accurate name for filtrate and retentate in chemical analysis of living tissue?
Filtrate: Acid-soluble pool
Retentate: acid-insoluble fraction
All the carbon compounds that we get from living tissues can be called ___________
biomolecules
Living organisms have both organic and inorganic elements and compounds in them. T or F?
True
How does one obtain the inorganic elements/compounds from living tissue?
Destructive experiment
Dry it, remaining material is dry weight. Burn tissue fully, all C compounds are oxidised to gaseous forms, remaining contains inorganic elements
What is ‘ash’
remains after drying and burning a tissue
Inorganic substances like sulphate and phosphate are also seen in the acid-soluble fraction. T or F?
True
Elemental analysis gives ____________ while analysis for compounds gives _________
elemental composition of living tissues (hydrogen, oxygen, etc.)
idea of organic and inorganic constituents
Amino acids are ______ compounds containing an amino group and a acidic group as ________ on the same ______
organic, substituents, carbon
Amino acids are on the alpha carbon, hence they are called ________
alpha amino acids
Amino acids are substituted _______
methanes
In amino acids, there are 4 _________ groups occupying ____ valency positions.
substituent, 4
What are the 4 substituent groups in amino acids?
Hydrogen
Carboxyl group
Amino group
Variable - R group
Based on the nature of _____ group there are many amino acids.
R
Only ______ (how many) types of amino acids occur in proteins
20
3 examples of R group in proteinaceous amino acids?
hydrogen H (glycine),
methyl group CH3 (alanine),
hydroxy methyl CH2-OH (serine)
Chemical and physical properties of amino acids are essentially of:
amino, carboxyl and R functional groups
Based on number of amino and carboxyl groups, there are _____ (what types of amino acids?)
acidic (glutamic)
basic (lysine, arginine)
neutral (valine)
What are some aromatic amino acids?
tyrosine,
phenylalanine,
tryptophan
Why is it that in solutions of different pH the structure of amino acids changes?
due to the ionizable nature of NH2 and COOH groups
% weight of the Hydrogen in Earth’s crust vs human body
0.14% (earth’s crust) vs 0.5% (human)
% weight of the Carbon in Earth’s crust vs human body
0.03% (earth’s crust) vs 18.5% (human)
% weight of the Oxygen in Earth’s crust vs human body
46.6% (earth’s crust) vs 65% (human)
% weight of the Nitrogen in Earth’s crust vs human body
very little (earth’s crust) vs 3.3 (human)
% weight of the Sulphur in Earth’s crust vs human body
0.03 (earth’s crust) vs 0.3 (human)
% weight of the Sodium in Earth’s crust vs human body
2.8 (earth’s crust) vs 0.2 (human)
% weight of the Calcium in Earth’s crust vs human body
3.6 (earth’s crust) vs 1.5 (human)
% weight of the Magnesium in Earth’s crust vs human body
2.1 (earth’s crust) vs 0.1 (human)
% weight of the Silicon in Earth’s crust vs human body
27.7 (earth’s crust) vs negligible (human)
What are “other” inorganic compounds found in living tissues (table 9.2)?
NaCl, CaCO3, PO4 3-, SO4 2-
Lipids are generally water insoluble or soluble?
Insoluble
A fatty acid has a _______ group attached to a _____ group
carboxyl group, R group
R group in simple fatty acid could be a _______ or _____ or ________
methyl (CH3) or ethyl (C2H5) or higher number of -CH2 groups (1 to 19 carbons)
Palmitic acid has _____ carbons including carboxyl carbon
16 carbons
Arachidonic acid has _____ carbons including carboxyl carbon
20 carbons
Fatty acids could be saturated or unsaturated. What do the bonds look like in each?
Saturated - without double bond
Unsaturated - with one or more C=C double bonds
Glycerol is a simple lipid. T or F?
True
Many lipids have both glycerol and fatty acids. T or F?
True
Glycerol is tri… ?
trihydroxy propane
In some lipids, fatty acids are found _______ with glycerol. What are the 3 types?
esterified,
mono, di and triglycerides
Mono-, di- and triglycerides are also called ____ and _____ based on melting points.
fats and oils
Fats have have a lower melting point than oils. T or F?
False
Some lipids have phosphorous and a _________ in them. They’re called phospholipids.
phosphorylated organic/nitrogenous compound
Phospholipids are found in _____ membrane.
cell
Lecithin is a __________
amino acid - phospholipid - carbohydrate - nucleoside
phospholipid
_________ tissues have lipids with more complex structures.
Neural
Nitrogen bases have ____ rings
heterocyclic
What are the nitrogen bases?
Adenine, Guanine, Thymine, Uracil and Cytosine
When nitrogen bases are attached to a sugar they are called ___________
nucleosides
When phosphate group is found esterified to sugar, in addition to nitrogen base, it is called _______
nucleotide
Name nucleosides and tides?
Nucleosides: Adenosine, guanosine, cytidine, thymidine, uridine
Nucleotides: Adenylic acid, guanylic acid, cytidylic acid, thymidylic acid, uridylic acid
DNA and RNA consist of nucleotides only. T or F?
True
If one were to make a list of biomolecules it would consist of 1000s of organic compounds. T or F?
True
Biomolecules are also known as ___________. Why?
metabolites
because all metabolic reactions result in transformation of biomolecules. they’re required for metabolic reactions and the results of these reactions.
In what tissues are all of these compounds present?
Alkaloids, flavonoids, rubber, essential oils, antibiotics, coloured pigments, scents, gums and spices
What are these compounds aka?
plant tissues;
secondary metabolites
In what tissues are all of these compounds present?
H, C, O, N, S, Na, Ca, Mg and Si
What are these compounds aka?
animal tissues;
primary metabolites
Primary vs. secondary metabolites?
Primary - animals, identifiable functions
secondary - plants, not all in-body functions are known but useful to human welfare & ecologically important
Carotenoids and anthocyanins are examples of?
pigments (secondary metabolites)
Morphine, Nicotine, trychnine, caffeine and Codeine are examples of?
alkaloids (secondary metabolites)
Monoterpenes, Diterpenes are examples of?
terpenoids (secondary metabolites)
Lemon grass oil is an example of?
essential oil (secondary metabolites)
Abrin and Ricin are examples of?
Toxins (secondary metabolites)
Concanavalin A is example of?
Lectin (secondary metabolites)
Vinblastin, curcumin are examples of?
drugs (secondary metabolites)
Rubber, gums, cellulose are examples of?
Polymeric substances (secondary metabolites)
What is one feature common to all compounds found in the acid-soluble pool?
molecular weights ranging from 18 to 800 daltons (Da)
Acid insoluble fraction has how many types of organic compounds? What are they?
4,
proteins, nucleic acids, polysaccharides and lipids
All acid soluble pool compounds weigh less than 800 Da whereas all acid insoluble pool compounds weigh in range of 10,000 Da and above (hence later called macromolecules). T or F?
False, first half is true, but not all acid insoluble pool compounds are heavy. Lipids do not exceed 800 Da.
Most molecules in the acid insoluble pool have molecular weights in the range of __________
10,000 Da and above
What are the 2 types of biomolecules (based on weight)
micromolecules - <1000 Da
macromolecules - >1000 Da (aka those found in acid insoluble fraction)
Biomacromolecules (and this excludes lipids) are polymeric substances. T or F?
True
Why do lipids come under acid insoluble fraction if they are so small?
cell membrane and other membranes are broken into pieces when tissue is ground. Forms vesicles that are not water soluble. Therefore they get separated along with acid insoluble pool.
Acid soluble pool roughly represents _______ composition
Cytoplasm
___________ and ___________ from the cytoplasm become the acid insoluble fraction
Macromolecules, organelles
__________ is the most abundant chemical in living organisms
Water
Proteins are polypeptides, ________ chains of amino acids linked by ____________
linear, peptide bonds
Each protein is a polymer of ___________
amino acids
A protein is a homo or heterpolymer?
Heteropolymer
What are essential amino acids? What is their source?
Cannot be made by our body. We get them from our diet/food.
Functions of proteins?
- transport nutrients across cell membrane
- fight infections
- hormones
- enzymes
- receptors
- structural proteins
_________ is the most abundant protein in animal world;
__________ is the most abundant protein in the biosphere
Collagen - animal
RuBisCo - biosphere
What is the function of collagen (protein)?
Intercellular ground substance
What is the function of trypsin (protein)?
enzyme
Acid insoluble pellet has carbohydrates. T or F?
True, polysaccharides
What is the function of insulin (protein)?
hormone
What is the function of antibody (protein)?
fights infectious agents
What is the function of receptor (protein)?
Sensory reception (smell, taste, hormone, etc.)
What is the function of GLUT-4 (protein)?
Enables glucose transport into cell
Polysaccharides are long chains of ________. They are threads containing different _______ as building blocks.
sugars; monosaccharides
Cellulose has how many types of monosaccharides?
1 - glucose
Cellulose is a homopolymer. T or F?
True, made of glucose only
_______ is a variant of cellulose, present as a store house of energy in plants whereas ______ variant is present in animals
starch, glycogen
______ is a polymer of fructose
Inulin
In glycogen (polysaccharide chain) , right end is called _________, left end is called _________
reducing, non-reducing
Polysaccharide chains have branches. T or F?
True
Starch forms _________ structures that can hold ______
helical secondary structures, can hold I2 molecules
Starch is ____ in color, while cellulose isn’t. What explains this?
blue.
Starch can hold I2, cellulose can’t (complex helixes absent)
Plant walls are made of ________
cellulose
Paper made from plant pulp and cotton fibre is __________
cellulosic
Complex polysaccharides found in nature have what as building blocks?
Amino-sugars and chemically modified sugars (glucosamine, N-acetyl galactosamine, etc.)
What are glucosamine and N-acetyl galactosamine?
amino-sugars / chemically modified sugars in complex polysaccharides
___________ of arthropods have complex polysaccharides called _____
Exoskeleton, chitin