chapter 16- dna replication Flashcards

1
Q

what is transformation

A

change in genotype and phenotype due to the assimilation of foreign dna

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2
Q

what is a virus/bacteriophage

A

dna or rna enclosed in a protective coat made of protein

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3
Q

how do viruses work

A

they infect their dna in the host cell, take over the machinery and make more viruses, the host cell bursts and releases the viruses

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4
Q

what are chargaff’s rules

A

base composition of dna varies between species
[A] = [T] and [C] = [G] in all species

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5
Q

how are dna strands built

A

antiparallel from 5’ to 3’

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6
Q

what group is at the 3’ and 5’ ends

A

free hydroxyl at the 3’ end
free phosphate at the 5’ end

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7
Q

how much space is present between the strand

A

enough for one purine and one pyrimidine (3 rings)

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8
Q

what is the diameter of the helix

A

2 nm

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9
Q

how many hydrogen bonds are between bases

A

adenine and thymine have 2
cytosine and guanine have 3

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10
Q

what is the semi conservative model

A

when the double helix replicates each daughter molecules will have one parental strand and one newly made strand

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11
Q

where does replication start

A

at specific sites called origins of replication

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12
Q

what happens at origins of replication

A

two dna strands are separated and a replication bubble is formed

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13
Q

what is a replication fork

A

the y shaped region at the end of the bubble where dna strands are separating

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14
Q

what does the helicase do

A

enzyme that unzips the double helix at the replication forks

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15
Q

what stabilizes the separated dna strands

A

single strand binding proteins

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16
Q

what do topoisomerase do

A

breaks, twists and rejoins the dna strands when they are too coiled ahead of the forks

17
Q

what does primase do

A

puts down rna nucleotides to make rna primer which starts the replication strand

18
Q

how many nucleotides are present in the rna primer

19
Q

what enzyme elongates the new strand

A

dna polymerase

20
Q

what is the rate of elongation in human cells

A

50 nucleotides per second (slow)

21
Q

what is added to the new dna strand and what happens to it when it binds

A

nucleoside triphosphate
loses two phosphate groups as pyrophosphate

22
Q

what supplies nucleotides to dna and whats different about it

A

datp, dgtp, dctp and dttp
has deoxyribose sugar unlike atp which has ribose

23
Q

what is the difference between the leading strand and the lagging strand and why does it happen

A

leading is built continuously
lagging makes okazaki fragments that need to be joined
strand can only be built 5’ to 3’

24
Q

what joins okazaki fragments together

A

ligase enzyme

25
how slow is the lagging strand
not much slower than leading it has more enzymes working on it than the leading strand so it comes out about the same
26
what is the difference between dna polymerase I and III
I removes the rna nucleotides and puts dna III adds bases after the rna primer
27
what do dna polymerase do once the strands are made
proofread the strands and correcting mistakes 3' to 5'
28
what happens when there is a stretch of dna that is damaged
nuclease will do a nucleotide excision repair
29
what is a nucleotide excision repair
the cutting out and replacement of damaged dna
30
downside to linear dna molecules (eukaryotes)
repeated replication shortens the ends because there is no way to complete the 5' ends
31
solution to dna shortening
telomeres
32
what do telomeres entail
postponing the erosion of genes near the ends catalyzed by telomerase in germ cells
33
what is the new strand of dna called
daughter strand
34
what is a chromatin
dna bound with histones
35
when is dna is chromosome form
only during cell division rest of the time is in chromatin form
36
where do short ends happen and why
on lagging strands there is no way to remove the rna primer and add dna nucleotides
37
where is telomerase expressed
only in stem and gamete cells in eukaryotic cells
38
what is a nucleosome
subunit of dna that is made up of dna wrapped around histone proteins