synthetic biology Flashcards

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1
Q

what is one of the most advanced piece of engineering

A

a plant

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2
Q

which is the plant so advanced

A

self repairing, self replicating, high adaptable

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3
Q

however..

A

we don’t understand some parts like we do an iphone

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4
Q

definition

A

the application of engineering principles in order to design and build ew biological parts, denies and integrated biological systems

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5
Q

SynBio is interdisciplnary

A

bio, physics, mats, comp sciences

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6
Q

when did SynBio start

A

2000- first synthetic circuits- toggle switch and repressor

- auto regulatory negative feedback circuit

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7
Q

richard eynaman

A

what i cannot create, i cannot understand

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8
Q

central focma

A

replication of DNAvia DNA polymerase. RNA polymerase produces RNA. which a ribosome translates into proteins

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9
Q

biological constraints which present challenges and stop biology being engineerable

A

cell growth/ death, crosstalk, mutation, evolution, chemical diffusion, underlining biological processes that interfere, butterfly effect

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10
Q

to get around the unengineerable nature of biology

A

1) design
2) modelling
3) characterisation
4) abstraction

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11
Q

synthetic biology parts

A

promoter, cds, ribosome entry site, terminator, operator, insulator, ribonuclease site, ma stability, protease site, protease site, protein stability element, origin of replication, primer binding site, restriction site, blunt restriction site, sticky restriction site, assembly scar, signature, user defined

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12
Q

what is importnant

A

consistent building block

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13
Q

enabling technolgies

A

DNA sequencing , online databases, dna synthesis, dna assembly, lab automation

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14
Q

dna synthesising has

A

got much cheaper over th years, the amount of info from dna sequencing has also increased

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15
Q

get huge amount of inform from

A

low computing imput

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16
Q

logic gates

A

sets inputs and outputs, all us to compute, can be produced in cell

17
Q

dna synthesising in modern times

A

send off and results come back within the week, instead of having to produce a vector, ligate, transform and screening of produced colony

18
Q

basic process of synbio

A

design, build, test, learn

19
Q

circuit of design/build/test/learn

A

has to be done 6/7 times until we have a fully engineer able biological system

20
Q

which part is key

A

the learning

21
Q

abstraction

A

1) DNA
2) Parts
3) devices
4) circuits
5) systems
6) multicellular

22
Q

application of SynBio e.g. microbial cell factors

A

Artemisinin- precursors for antimalarial drug- can now brow in yeast

23
Q

application of SynBio e.g. biosensors

A

pika and ebola- paper based- toehold switches