Infection Diagnosis Flashcards

1
Q

What does microbiology do?

A

Identify infecting organism

Susceptibility testing

Identify clusters organisms over-represented in community

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2
Q

Importance of identifying infecting organism I microbiology:

A

Diagnostic advice

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3
Q

Importance of susceptibility testing in microbiology:

A

Treatment advice

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4
Q

Importance of identifying clustered organisms in microbiology:

A

Infection and outbreak control

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5
Q

What are laboratory tests for?

A

Doctor’s back up

Help when antibiotics are unpredictable

Provide intelligence system

Detection of outbreak samples

Permit collection of alert organisms

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6
Q

Why do clinicians not use microbiology results?

A

Speed of progression much faster than time taken to generate results

Difficult to understand implications of data - very complex

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7
Q

Roles of clinical microbiologist:

A

High quality diagnostic tests

Clinical consultation service

Clinical advice

Advice on therapy of serious infections
Manage control of infection issues within hospital

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8
Q

How do you make a microbiological diagnosis?

A

Direct examination

Culture

Serology

Molecular

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9
Q

Advantages of a smear diagnosis:

A

Rapid

Simple

Cheap

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10
Q

Disadvantages of smear diagnosis:

A

Not very sensitive + specific

Requires considerable expertise

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11
Q

What does light microscopy involve?

A

Direct (parasites)

Gram stain (CSF - bacteria)

Z-N (sputum - TB)

Giemsa stain (blood - malaria)

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12
Q

What does fluorescent microscopy involve?

A

Respiratory syncytial virus (RSV) diagnosis

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13
Q

What does electron microscopy involve?

A

Virus detection and identification

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14
Q

Advantages of culture diagnosis:

A

More sensitive than spear

Susceptibility testing

Rapid

Detailed identification

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15
Q

Disadvantages of culture diagnosis:

A

Rendered negative by antibiotics - bacteria less likely to grow

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16
Q

Advantages of MALDI-TOF:

A

Rapid identification of bacteria

17
Q

Disadvantages of MALDI-TOF:

A

Doesn’t provide susceptibilities

Delayed by slow growth - requires culture step on agar

Rendered negative by antibiotics

18
Q

What does a serological diagnosis do?

A

Detect high IgG concentration

Detect rising of falling titres

Detect IgM/IgA

Measure avidity of binding

Detect antigen

19
Q

Give examples of serological techniques:

A

Agglutination

Precipitation

Complement fixation

Virus neutralisation

Enzyme linked immunosorbent assay

Radioimmunoassay

Immunofluorescence

20
Q

Give examples of molecular techniques:

A

DNA hybridisation

Nucleic acid amplification testing

21
Q

What’s involved in nucleic acid amplification testing?

A

Polymerase chain reaction (PCR)

Ligase chain reaction

Automated DNA amplification

Real time PCR

22
Q

Disadvantages of culture based diagnosis:

A

Many organisms don’t grow on agar

Specimens rendered negative by antibiotics

Missed diagnosis

Infection aetiology not understood

Missing prognostic information

23
Q

What specimens have a single pathogen?

A

Throat swab

Infection control screening

Unusual infections

Mtb detection

24
Q

What specimens have a few organisms?

A

CSF

STI samples

Blood

25
Q

Which specimens have multiple pathogens?

A

Faeces

Abscess pus

LRTI samples

Oral swab

Urine

26
Q

What is evidence of a positive diagnosis?

A

Sensitivity

Specificity

Predictive value of positive and negative test

27
Q

What’s sensitivity?

A

Ability of test to detect all true positives

Equal to number of positives obtained divided by total number of positives

28
Q

What’s specificity?

A

Ability to identify number of true negatives

Equal to number of negatives obtained divided by number of true negatives

29
Q

What’s the normal flora?

A

Everywhere - many pathogens are colonisers

Interpretation of all microbiology results must be made in context of normal flora