microbiology ch 5 Flashcards
What breaks down complex molecules, provides energy and building blocks for anabolism, and is exergonic and hydrolytic?
Catabolism
What reactions produce more energy than they consume?
Exergonic
These reactions use water and break chemical bonds
Hydrolytic
What do hyrdolytic reactions do?
Break chemical bonds using water
What type of reactions use energy to build complex molecules, are endergonic and use dehydration synthesis?
Anabolism
These reactions consume more energy than they produce
Endergonic
These reactions release water
Dehydration synthesis
What is a metabolic pathway?
Sequence of enzymatically catalyzed chemical reactions in a cell
What determines metabolic pathways?
Enzymes
What are enzymes encoded by?
Genes
These are sequences of enzymatically catalyzed chemical reactions in a cell
Metabolic pathways
Enzymes determine these
Metabolic pathways
Genes encode these
Enzymes
What does collision theory state?
That chemical reactions occur when atoms, ions, and molecules collide
What is the basis of collision theory?
That all atoms, ions, and molecules are continuously moving and colliding with one another
What can the energy transferred by colliding particles do?
Break chemical bonds or form new bonds
This states that chemical reactions occur when atoms, ions, and molecules collide
Collision theory
This explains how chemical reactions occur and how certain factors affect the rates of those reactions
Collision theory
How can chemical bonds be broken or formed?
By the energy transferred to them during collision breaking their electron structures
What is activation energy?
The collision energy required for a chemical reaction to occur
What is reaction rate?
The frequency of collisions containing enough energy to bring about a reaction
What four factors can increase reaction rate?
Enzymes, increasing temperature, increasing pressure, increasing concentration
This is the collision energy needed for chemical reactions to occur
Activation energy
This is the frequency of collisions with enough energy to cause reactions
Reaction rate
Enzymes, or increases in temperature, pressure, or concentration can cause this
Reaction rate increase
What are enzymes?
Biological catalysts
What can catalysts do?
Speed up chemical reactions without being altered
What do enzymes act on?
A specific substrate
How do enzymes increase the rate of reaction?
By lowering activation energy
These are biological catalysts
Enzymes
These can speed up chemical reactions without being changed themselves
Catalysts
What is an enzyme-substrate complex?
Formation of enzyme’s active site and substrate
What happens to the substrate on an enzyme’s active site?
It is transformed, rearranged into products, and released from enzyme
What happens to the enzyme after the substrate is released?
The enzyme is unchanged and can react with other substrates
This is formed by joining a substrate to an enzyme’s active bonding site
Enzyme-substrate complex
What is turnover number?
The number of substrate molecules an enzyme converts to a product per second
How high can enzyme turnover number be?
500,000
What is the general range of enzyme turnover?
1 to 10,000
This is the number of substrate molecules an enzyme converts to a product per second
Turnover number
What do enzyme names typically end with?
-ase
What are enzyme names based on?
The reaction they catalyze
What reactions is oxidoreductase involved with?
Oxidation-reduction reactions
What reactions is transferase involved with?
Transfer of functional groups such as amino, acetyl, and phosphate groups
What reactions is hydrolase involved with?
Hydrolysis
What reactions is lyase involved with?
Removal of atoms without hydrolysis
What reactions is isomerase involved with?
Rearrangement of atoms within a molecule
What reactions is ligase involved with?
Joining of molecules using ATP
This enzyme is involved with oxidation-reduction reactions
Oxidoreductase
This enzyme is involved in functional group transfer
Transferase
This enzyme is involved with hydrolysis
Hydrolase
This enzyme is involved with the removal of atoms without hydrolysis
Lyase
This enzyme is involved with the rearrangement of atoms within a molecule
Isomerase
This enzyme is involved in the joining of molecules using ATP
Ligase
What are coenzymes/cofactors?
Enzyme ‘helpers’/electron carriers
What four factors influence enzyme activity?
Temperature, pH, substrate concentration and inhibitors
How does high temperature influence enzyme activity?
High temperature can denature proteins
What does it mean to denature a protein?
Loss of its characteristic three-dimensional structure (tertiary configuration)
How can extreme pH influence enzyme activity?
By denaturing proteins
Do enzymes have an optimum pH?
Yes
Do enzymes catalyze faster with a higher substrate concentration?
Yes
What is saturation?
When concentration of substrate is high enough for enzyme to catalyze at maximum rate
When substrate concentration is high and enzyme catalyzes at maximum rate, this is reached
Saturation
What do competitive inhibitors do?
Fill active site of an enzyme and compete with substrate
This fill the active site of an enzyme and compete with the substrate
Competitive inhibitors
What do noncompetitive inhibitors do?
Interact with another part of enzyme rather than active site
What is allosteric inhibition?
Interaction of noncompetitive inhibitors with enzyme
What is an allosteric site?
A site other than the active site
How do noncompetitive inhibitors render enzymes nonfunctional?
By altering the shape of the active site
These interact with an allosteric site to render enzyme nonfunctional
Noncompetitive inhibitors
This is a site on an enzyme that is not its active site
Allosteric site
This is the interaction of noncompetitive inhibitors with an enzyme
Allosteric inhibition
What is feedback inhibition?
End-product of reaction allosterically inhibits enzymes from earlier in pathway
This happens when a reaction end-product allosterically inhibits an enzyme at an earlier point in pathway
Feedback inhibition
What are ribozymes?
RNA that function as catalysts by binding to substrates and acting upon them
What are ribozymes used for in cells?
To cut and splice RNA; also involved in protein synthesis in ribosomes
Are ribozymes used up in the reaction?
No
These are RNA that function as catalysts
Ribozymes
These are used in cells to cut/splice RNA and to synthesize proteins and ribosomes
Ribozymes
What is the removal of electrons called?
Oxidation
What is the gain of electrons called?
Reduction
What is the pairing of an oxidation reaction and a reduction reaction called?
Redox reaction
What is oxidation?
Removal of electrons
What is reduction?
Gain of electrons
What is a redox reaction?
An oxidation reaction paired with a reduction reaction
What are removed simultaneously in biological systems?
Electrons and protons
What is an electron and proton the equivalent of?
One hydrogen atom
Biological oxidations are often this type of reaction
Dehydrogenations
What is dehydrogenation?
Loss of hydrogen atoms
How are electrons and protons removed in biological systems?
Simultaneously
What is the equivalent of one hydrogen atom?
One electron and proton
This is the loss of hydrogen atoms
Dehydrogenation
How is ATP generated?
By the phosphorylation of ADP with the input of energy
What is generated by the phosphorylation of ADP with the input of energy?
ATP
What is generated when high-energy PO4- is added to ADP from a phosphorylated compound?
ATP
What has to be added to ADP from a phosphorylated compound to generate ATP?
High-energy PO4-
This transfers electrons from one electron carrier to another
Electron transport chain
The electron transport chain transfers electrons along a membrane, releasing energy to generate this
ATP
What is the process wherein ATP is generated from ADP using energy derived from the electron transport chain?
Chemiosmosis
What is the electron transport chain?
Electrons transferred from one electron carrier to another along a membrane that releases energy to generate ATP
What is chemiosmosis?
The process wherein ATP is generated from ADP using the energy derived from the electron transport chain
In what type of cells does photophosphorylation occur?
In photosynthetic cells with light-trapping pigments
What is the process of photophosphorylation?
Light energy is converted to chemical energy (ATP) during the transfer of electrons (oxidation) from chlorophyll as they pass through a system of carrier molecules
In photosynthetic cells with light-trapping pigments such as chlorophyll, this occurs
Photophosphorylation
In this process, light energy is converted to chemical energy during the transfer of electrons from chlorophyll as they pass through a system of carrier molecules
Photophosphorylation
What are series of enzymatically catalyzed chemical reactions that extract energy from organic compounds and store it in chemical form?
Metabolic pathways
How do metabolic pathways store extracted energy?
As ATP
What is carbohydrate catabolism?
The breakdown of carbohydrate molecules to produce energy
What is the most common carbohydrate energy source used by cells?
Glucose