Microbiology - Clinical Bacteriology Flashcards
1
Q
Gram-positive lab algorithm (129)
A
2
Q
Identification of gram-positive cocci
- Staphylococci
- Streptococci
A
- Staphylococci
-
NOvobiocin
- _S_aprophyticus is _R_esistant;
- _E_pidermidis is _S_ensitive.
- On the office’s “staph” retreat, there was NO St_RES_s.
-
NOvobiocin
- Streptococci
-
Optochin
- _V_iridans is _R_esistant;
- _P_neumoniae is _S_ensitive.
- OVRPS (overpass).
-
Bacitracin
- Group B** strep are **Resistant;
- Group A** strep are **Sensitive.
- B-BRAS.
-
Optochin
3
Q
α- vs. β-hemolytic bacteria
- α-hemolytic bacteria
- β-hemolytic bacteria
A
- α-hemolytic bacteria
- Form green ring around colonies on blood agar.
- Include the following organisms:
- Streptococcus pneumoniae (catalase (-) and optochin sensitive)
- Viridans streptococci (catalase (-) and optochin resistant)
- β-hemolytic bacteria
- Form clear area of hemolysis on blood agar.
- Include the following organisms:
- Staphylococcus aureus (catalase and coagulase (+))
- Streptococcus pyogenes—group A strep (catalase (-) and bacitracin sensitive)
- Streptococcus agalactiae—group B strep (catalase (-) and bacitracin resistant)
- Listeria monocytogenes (tumbling motility, meningitis in newborns, unpasteurized milk)
4
Q
Staphylococcus aureus
- Properties
- Causes…
- TSST
- S. aureus food poisoning
A
- Properties
- Gram-positive cocci in clusters [A].
- Protein A (virulence factor) binds Fc-IgG, inhibiting complement activation and phagocytosis.
- Commonly colonizes the nose.
- Staph make catalase because they have more “staff.”
- Bad staph (aureus) make coagulase and toxins.
- Causes…
-
Inflammatory disease—skin infections, organ abscesses, pneumonia (often after influenza virus infection), endocarditis, and osteomyelitis
- Forms fibrin clot around self –> abscess.
- Toxin-mediated disease—toxic shock syndrome (TSST-1), scalded skin syndrome (exfoliative toxin), rapid-onset food poisoning (enterotoxins)
- MRSA (methicillin-resistant S. aureus) infection—important cause of serious nosocomial and community-acquired infections; resistant to methicillin and nafcillin because of altered penicillin-binding protein
-
Inflammatory disease—skin infections, organ abscesses, pneumonia (often after influenza virus infection), endocarditis, and osteomyelitis
- TSST
- A superantigen that binds to MHC II and T-cell receptor, resulting in polyclonal T-cell activation.
- Presents as fever, vomiting, rash, desquamation, shock, end-organ failure.
- Use of vaginal or nasal tampons predisposes to toxic shock syndrome.
- S. aureus food poisoning
- Due to ingestion of preformed toxin –> short incubation period (2–6 hr).
- Enterotoxin is heat stable –> not destroyed by cooking.
5
Q
Staphylococcus
- Staphylococcus epidermidis
- Staphylococcus saprophyticus
A
- Staphylococcus epidermidis
- Infects prosthetic devices and intravenous catheters by producing adherent biofilms.
- Component of normal skin flora
- Contaminates blood cultures.
- Novobiocin sensitive.
- Staphylococcus saprophyticus
- Second most common cause of uncomplicated UTI in young women (first is E. coli).
- Novobiocin resistant.
6
Q
Streptococcus pneumoniae
- Most common cause of…
- Properties
- Pneumococcus is associated with…
- Virulence
A
- Most common cause of…
- Meningitis
- Otitis media (in children)
- Pneumonia
- Sinusitis
- S. pneumoniae MOPS are Most OPtochin Sensitive
- Properties
- Lancet-shaped, gram-positive diplococci [A].
- Encapsulated.
- IgA protease.
- No virulence without capsule.
- Pneumococcus is associated with “rusty” sputum, sepsis in sickle cell anemia and splenectomy.
7
Q
Viridans group streptococci
- Properties
- Cause…
- S. sanguinis
A
- Properties
- Viridans streptococci are α-hemolytic.
- Normal flora of the oropharynx
- Resistant to optochin, differentiating them from S. pneumoniae, which is α-hemolytic but is optochin sensitive.
- Viridans group strep live in the mouth because they are not afraid of-the-chin (op-to-chin resistant)
- Cause
- Dental caries (Streptococcus mutans)
- Subacute bacterial endocarditis at damaged valves (S. sanguinis)
- S. sanguinis
- Sanguis = blood.
- There is lots of blood in the heart (endocarditis).
- S. sanguinis makes dextrans, which bind to fibrin-platelet aggregates on damaged heart valves.
8
Q
Streptococcus pyogenes (group A streptococci)
- Causes…
- Properties
- Jones criteria
A
- Causes…
- Pyogenic—pharyngitis, cellulitis, impetigo
- Impetigo more commonly precedes glomerulonephritis than pharyngitis.
- Toxigenic—scarlet fever, toxic shock–like syndrome, necrotizing fasciitis
- Scarlet fever: scarlet rash with sandpaper-like texture, strawberry tongue, circumoral pallor.
- Immunologic—rheumatic fever, acute glomerulonephritis
- Pharyngitis can result in rheumatic “phever” and glomerulonephritis.
- Pyogenic—pharyngitis, cellulitis, impetigo
- Properties
- Bacitracin sensitive.
- Antibodies to M protein enhance host defenses against S. pyogenes but can give rise to rheumatic fever.
- ASO titer detects recent S. pyogenes infection.
-
J♥NES criteria for rheumatic fever
- Joints—polyarthritis
- ♥—carditis
- Nodules (subcutaneous)
- Erythema marginatum
- Sydenham chorea
9
Q
Streptococcus agalactiae (group B streptococci)
- Properties
- Causes…
- Produces…
- Screening
A
- Properties
- Bacitracin resistant
- β-hemolytic
- Colonizes vagina
- Causes…
- Pneumonia, meningitis, and sepsis, mainly in babies.
- Group **B for **Babies.
- Produces CAMP factor, which enlarges the area of hemolysis formed by S. aureus.
- Note: CAMP stands for the authors of the test, not cyclic AMP.
- Hippurate test (+).
- Screening
- Screen pregnant women at 35–37 weeks.
- Patients with (+) culture receive intrapartum penicillin prophylaxis.
10
Q
Group D streptococci
- Enterococci
- Definition
- Properties
- Streptococcus bovis
A
- Enterococci
- Definition
- Entero = intestine, faecalis = feces, strepto = twisted (chains), coccus = berry.
- Enterococci (Enterococcus faecalis and E. faecium) are normal colonic flora that are penicillin G resistant and cause UTI, biliary tract infections, and subacute endocarditis (following GI/GU procedures).
- Lancefield group D includes the enterococci and the nonenterococcal group D streptococci.
- Lancefield grouping is based on differences in the C carbohydrate on the bacterial cell wall.
- Properties
- Variable hemolysis.
- VRE (vancomycin-resistant enterococci) are an important cause of nosocomial infection.
- Enterococci, hardier than nonenterococcal group D, can grow in 6.5% NaCl and bile (lab test).
- Definition
- Streptococcus bovis
- Colonizes the gut.
- Can cause bacteremia and subacute endocarditis in colon cancer patients.
- Bovis in the blood = cancer in the colon.
11
Q
Corynebacterium diphtheriae
- Causes…
- Mechanism
- Symptoms
- Lab diagnosis
- Prevention
- Mnemonic
A
- Causes…
- Diphtheria via exotoxin encoded by β-prophage.
- Mechanism
- Potent exotoxin inhibits protein synthesis via ADP-ribosylation of EF-2.
- Symptoms
- Pseudomembranous pharyngitis (grayish-white membrane [A]) with lymphadenopathy, myocarditis, and arrhythmias.
- Lab diagnosis
- Based on gram-positive rods with metachromatic (blue and red) granules and Elek test for toxin.
- Black colonies on cystine-tellurite agar.
- Coryne = club shaped.
- Prevention
- Toxoid vaccine prevents diphtheria.
-
ABCDEFG:
- ADP-ribosylation
- Beta-prophage
- Corynebacterium
- Diphtheriae
- _E_longation _F_actor 2
- Granules
12
Q
Spores: bacterial
- Spores
- Spore-forming gram-positive bacteria found in soil
- Other spore formers
A
- Spores
- Some bacteria can form spores at the end of the stationary phase when nutrients are limited.
- Spores are highly resistant to heat and chemicals.
- Have dipicolinic acid in their core.
- Have no metabolic activity.
- Must autoclave to kill spores (as is done to surgical equipment) by steaming at 121°C for 15 minutes.
- Spore-forming gram-positive bacteria found in soil
- Bacillus anthracis, Clostridium perfringens, C. tetani.
- Other spore formers
- B. cereus, C. botulinum, Coxiella burnetii.
13
Q
Clostridia (with exotoxins)
- Clostridia
- C. tetani
- C. botulinum
- C. perfringens
- C. difficile
A
- Clostridia
- Gram-positive, spore-forming, obligate anaerobic bacilli.
- C. tetani
- Produces tetanospasmin, an exotoxin causing tetanus.
- Tetanus toxin (and botulinum toxin) are proteases that cleave releasing proteins for neurotransmitters.
-
Tetanus is tetanic paralysis
- Blocks glycine and GABA release (both are inhibitory neurotransmitters) from Renshaw cells in spinal cord
- Causes spastic paralysis, trismus (lockjaw), and risus sardonicus.
- Produces tetanospasmin, an exotoxin causing tetanus.
- C. botulinum
- Produces a preformed, heat-labile toxin that inhibits ACh release at the neuromuscular junction, causing botulism.
- In adults, disease is caused by ingestion of preformed toxin.
- In babies, ingestion of spores in honey causes disease (floppy baby syndrome).
- Botulinum is from bad bottles of food and honey (causes a flaccid paralysis).
- Produces a preformed, heat-labile toxin that inhibits ACh release at the neuromuscular junction, causing botulism.
- C. perfringens
- Produces α toxin (“lecithinase,” a phospholipase) that can cause myonecrosis (gas gangrene) and hemolysis.
- Perfringens perforates a gangrenous leg.
- C. difficile
- Produces 2 toxins.
- Toxin A, enterotoxin, binds to the brush border of the gut.
- Toxin B, cytotoxin, causes cytoskeletal disruption via actin depolymerization –> pseudomembranous colitis –> diarrhea.
- Difficile causes diarrhea.
- Often 2° to antibiotic use, especially clindamycin or ampicillin.
- Diagnosed by detection of one or both toxins in stool.
- Treatment: metronidazole or oral vancomycin.
- For recurring cases, fecal transplant may prevent relapse.
- Produces 2 toxins.
14
Q
Anthrax
- Caused by…
- Cutaneous anthrax
- Pulmonary anthrax
A
- Caused by Bacillus anthracis
- A gram-positive, spore-forming rod [A] that produces anthrax toxin.
- The only bacterium with a polypeptide capsule (contains D-glutamate).
- Cutaneous anthrax
- Boil-like lesion –> ulcer with black eschar [A] (painless, necrotic) –> uncommonly progresses to bacteremia and death.
- Pulmonary anthrax
- Inhalation of spores –> flu-like symptoms that rapidly progress to fever, pulmonary hemorrhage, mediastinitis, and shock.
- Woolsorters’ disease—inhalation of spores from contaminated wool.
15
Q
Bacillus cereus
- Causes…
- Emetic type
- Diarrheal type
A
- Causes food poisoning.
- Spores survive cooking rice.
- Reheated rice syndrome.
- Keeping rice warm results in germination of spores and enterotoxin formation.
- Spores survive cooking rice.
- Emetic type usually seen with rice and pasta.
- Nausea and vomiting within 1–5 hr.
- Caused by cereulide, a preformed toxin.
- Diarrheal type causes watery, nonbloody diarrhea and GI pain within 8–18 hr.
16
Q
Listeria monocytogenes
- Properties
- Causes…
- Treatment
A
- Properties
- Facultative intracellular microbe
- Acquired by ingestion of unpasteurized dairy products and deli meats, via transplacental transmission, or by vaginal transmission during birth.
- Form “rocket tails” (via actin polymerization) that allow them to move through the cytoplasm and into the cell membrane, thereby avoiding antibody.
- Characteristic tumbling motility
- Only gram-positive organism to produce LPS.
- Causes…
- Amnionitis, septicemia, and spontaneous abortion in pregnant women;
- Granulomatosis infantiseptica;
- Neonatal meningitis;
- Meningitis in immunocompromised patients;
- Mild gastroenteritis in healthy individuals.
- Treatment:
- Gastroenteritis usually self-limited
- Ampicillin in infants, immunocompromised patients, and the elderly in empirical treatment of meningitis.
17
Q
Actinomyces vs. Nocardia
- Both
- Gram
- Acid fast?
- Found in…
- Causes…
- Treatment
A
- Both
- Form long, branching filaments resembling fungi.
- Gram
- A: Gram-positive anaerobe [A]
- N: Gram-positive aerobe
- Acid fast?
- A: Not acid fast
- N: Acid fast (weak) [B]
- Found in…
- A: Normal oral flora
- N: Soil
- Causes…
- A: oral/facial abscesses that drain through sinus tracts, forms yellow “sulfur granules”
- N: pulmonary infections in immunocompromised and cutaneous infections after trauma in immunocompetent
- Treatment
- A: Penicillin
- N: Sulfonamides
18
Q
1° and 2° tuberculosis (134)
- PPD(+)
- PPD(-)
- Interferon-γ release assay (IGRA)
A
- PPD(+)
- If current infection, past exposure, or BCG vaccinated.
- PPD(-) i
- If no infection or anergic (steroids, malnutrition, immunocompromise) and in sarcoidosis.
- Interferon-γ release assay (IGRA)
- A more specific test
- Has fewer false positives from BCG vaccination.
19
Q
Mycobacteria
- M. tuberculosis
- M. kansasii
- M. avium
- All mycobacteria
- TB symptoms
- Cord factor
- Sulfatides
A
- M. tuberculosis
- TB, often resistant to multiple drugs
- M. kansasii
- Pulmonary TB-like symptoms
- M. avium–intracellulare
- Causes disseminated, non-TB disease in AIDS
- Often resistant to multiple drugs
- Prophylactic treatment with azithromycin.
- All mycobacteria are acid-fast organisms [A]
- TB symptoms
- Fever, night sweats, weight loss, and hemoptysis.
- Cord factor in virulent strains
- Inhibits macrophage maturation
- Induces release of TNF-α.
- Sulfatides (surface glycolipids)
- Inhibit phagolysosomal fusion.
20
Q
Leprosy (Hansen disease)
- Caused by…
- 2 forms
- Lepromatous
- Tuberculoid
- Treatment
- Lepromatous
- Tuberculoid
A
- Caused by Mycobacterium leprae
- An acid-fast bacillus
- Likes cool temperatures
- Infects skin and superficial nerves—“glove and stocking” loss of sensation
- Cannot be grown in vitro.
- Reservoir in United States: armadillos.
- 2 forms
-
Lepromatous
- Presents diffusely over the skin [A], with leonine (lion-like) facies [B], and is communicable
- Characterized by low cell-mediated immunity with a humoral Th2 response.
- Lepromatous can be lethal.
-
Tuberculoid
- Limited to a few hypoesthetic, hairless skin plaques
- Characterized by high cell-mediated immunity with a largely Th1- type immune response.
-
Lepromatous
- Treatment:
- Lepromatous
- Dapsone, rifampin, and clofazimine for 2–5 years
- Tuberculoid
- Multidrug therapy consisting of dapsone and rifampin for 6 months
- Lepromatous