Gastrointestinal - Embryology and Anatomy Flashcards
GI embryology
- Foregut
- Midgut
- Hindgut
- Developmental defects of anterior abdominal wall due to failure of:
- Rostral fold closure
- Lateral fold closure
- Caudal fold closure
- Foregut
- Pharynx to duodenum.
- Midgut
- Duodenum to proximal 2/3 of transverse colon.
- Hindgut
- Distal 1/3 of transverse colon to anal canal above pectinate line.
- Developmental defects of anterior abdominal wall due to failure of:
- Rostral fold closure: sternal defects
- Lateral fold closure: omphalocele, gastroschisis
- Caudal fold closure: bladder exstrophy

GI embryology
- Pathology
- Duodenal atresia
- Jejunal, ileal, colonic atresia
- Midgut development
- Gastroschisis
- Omphalocele
- Pathology
- Malrotation of midgut, omphalocele, intestinal atresia or stenosis, volvulus.
- Duodenal atresia
- Failure to recanalize (trisomy 21).
- Jejunal, ileal, colonic atresia
- Due to vascular accident (apple peel atresia).
- Midgut development
- 6th week—midgut herniates through umbilical ring
- 10th week—returns to abdominal cavity + rotates around SMA
-
Gastroschisis
- Extrusion of abdominal contents through abdominal folds
- Not covered by peritoneum.
-
Omphalocele**
- Persistence of herniation of abdominal contents into umbilical cord, sealed by peritoneum [A].

Tracheoesophageal anomalies
- Most common
- Clinical test
- H-type vs. pure
- Esophageal atresia (EA) with distal tracheoesophageal fistula (TEF) is the most common (85%).
- Results in drooling, choking, and vomiting with first feeding.
- TEF allows air to enter stomach (visible on CXR).
- Cyanosis is 2° to laryngospasm (to avoid reflux-related aspiration).
- Clinical test
- Failure to pass nasogastric tube into stomach.
- H-type vs. pure
- In H-type it is a fistula alone.
- In pure atresia (isolated) EA the CXR shows gasless abdomen.

Congenital pyloric stenosis
- Hypertrophy of the pylorus causes obstruction.
- Occurs in 1/600 live births, more often in firstborn males.
- Palpable “olive” mass in epigastric region and nonbilious projectile vomiting at ≈2–6 weeks old.
- Treatment is surgical incision.
Pancreas and spleen embryology
- Pancreas
- Annular pancreas
- Pancreas divisum
- Spleen
- Pancreas
- Derived from foregut.
- Ventral pancreatic buds contribute to the pancreatic head and main pancreatic duct.
- The uncinate process is formed by the ventral bud alone.
- The dorsal pancreatic bud becomes everything else (body, tail, isthmus, and accessory pancreatic duct).
-
Annular pancreas
- Ventral pancreatic bud abnormally encircles 2nd part of duodenum
- Forms a ring of pancreatic tissue that may cause duodenal narrowing.
-
Pancreas divisum
- Ventral and dorsal parts fail to fuse at 8 weeks.
- Spleen
- Arises in mesentery of stomach (hence is mesodermal) but is supplied by foregut (celiac artery).

Retroperitoneal structures
- Retroperitoneal structures
- Injuries to retroperitoneal structures
- Retroperitoneal structures include GI structures that lack a mesentery and non-GI structures.
- A DUCK PEAR
- Adrenal glands (suprarenal)
- Duodenum (2nd through 4th parts)
- Ureters
- Colon (asecnding & descending)
- Kidneys
- Pancreas (except tail)
- Esophagus (lower 2/3)
- Aorta and IVC
- Rectum (partially)
- Injuries to retroperitoneal structures can cause blood or gas accumulation in retroperitoneal space.

Falciform ligament
- Connects…
- Structures contained
- Notes
- Connects…
- Liver to anterior abdominal wall
- Structures contained
- Ligamentum teres hepatis (derivative of fetal umbilical vein)
- Notes
- Derivative of ventral mesentery

Hepatoduodenal ligament
- Connects…
- Structures contained
- Notes
- Connects…
- Liver to duodenum
- Structures contained
- Portal triad: proper hepatic artery, portal vein, common bile duct
- Notes
- Pringle maneuver—ligament may be compressed between thumb and index finger placed in omental foramen to control bleeding
- Borders the omental foramen, which connects the greater and lesser sacs

Gastrohepatic ligament
- Connects…
- Structures contained
- Notes
- Connects…
- Liver to lesser curvature of stomach
- Structures contained
- Gastric arteries
- Notes
- Separates greater and lesser sacs on the right
- May be cut during surgery to access lesser sac

Gastrocolic ligament
- Connects…
- Structures contained
- Notes
- Connects…
- Greater curvature and transverse colon
- Structures contained
- Gastroepiploic arteries
- Notes
- Part of greater omentum

Gastrosplenic ligament
- Connects…
- Structures contained
- Notes
- Connects…
- Greater curvature and spleen
- Structures contained
- Short gastrics, left gastroepiploic vessels
- Notes
- Separates greater and lesser sacs on the left

Splenorenal ligament
- Connects…
- Structures contained
- Connects…
- Spleen to posterior abdominal wall
- Structures contained
- Splenic artery and vein, tail of pancreas

Digestive tract anatomy
- Layers of gut wall
- Ulcers vs. erosions
- Frequencies of basal electric rhythm
- Stomach
- Duodenum
- Ileum
- Layers of gut wall (inside to outside—MSMS):
- Mucosa—epithelium (absorption), lamina propria (support), muscularis mucosa (motility)
- Submucosa—includes Submucosal nerve plexus (Meissner)
- Muscularis externa—includes Myenteric nerve plexus (Auerbach)
- Serosa (when intraperitoneal)/adventitia (when retroperitoneal)
- Ulcers vs. erosions
- Ulcers can extend into submucosa, inner or outer muscular layer.
- Erosions are in the mucosa only.
- Frequencies of basal electric rhythm (slow waves):
- Stomach—3 waves/min
- Duodenum—12 waves/min
- Ileum—8–9 waves/min

Digestive tract histology
- Esophagus
- Stomach
- Duodenum
- Jejunum
- Ileum
- Colon
- Esophagus
- Nonkeratinized stratified squamous epithelium.
- Stomach
- Gastric glands.
- Duodenum
- Villi and microvilli increase absorptive surface.
- Brunner glands (submucosa) and crypts of Lieberkühn.
- Jejunum
- Plicae circulares and crypts of Lieberkühn.
- Ileum
- Peyer patches (lamina propria, submucosa), plicae circulares (proximal ileum), and crypts of Lieberkühn.
- Largest number of goblet cells in the small intestine.
- Colon
- Colon has crypts of Lieberkühn but no villi.
- Numerous goblet cells.
Abdominal aorta and branches
- Arteries supplying…
- GI structures branch…
- Non-GI structures branch…
- Superior mesenteric artery (SMA) syndrome
- Arteries supplying…
- GI structures branch anteriorly.
- Non-GI structures branch laterally.
- Superior mesenteric artery (SMA) syndrome
- Occurs when the transverse portion (third segment) of the duodenum is entrapped between SMA and aorta, causing intestinal obstruction.

GI blood supply and innervation for the following embryonic gut regions
- For each
- Artery
- Parasympathetic innervation
- Vertebral level
- Structures supplied
- Foregut
- Midgut
- Hindgut
- Foregut
- Artery: Celiac
- Parasympathetic innervation: Vagus
- Vertebral level: T12/L1
- Structures supplied: Pharynx to proximal duodenum, liver, gallbladder, pancreas, spleen (mesoderm)
- Midgut
- Artery: SMA
- Parasympathetic innervation: Vagus
- Vertebral level: L1
- Structures supplied: Distal duodenum to proximal 2/3 of transverse colon
- Hindgut
- Artery: IMA
- Parasympathetic innervation: Pelvic
- Vertebral level: L3
-
Structures supplied: Distal 1/3 of transverse colon to upper portion of rectum
- Splenic flexure is a watershed region
Celiac trunk
- Branches of celiac trunk
- Short gastrics
- Strong anastomoses exist between:
- Branches of celiac trunk:
- Common hepatic, splenic, left gastric.
- These constitute the main blood supply of the stomach.
- Short gastrics
- Have poor anastomoses if splenic artery is blocked.
- Strong anastomoses exist between:
- Left and right gastroepiploics
- Left and right gastrics

Collateral arterial circulation:
If branches off of the abdominal aorta are blocked, these arterial anastomoses (origin) compensate
- Superior epigastric (internal thoracic/mammary) ↔ inferior epigastric (external iliac)
- Superior pancreaticoduodenal (celiac trunk) ↔ inferior pancreaticoduodenal (SMA)
- Middle colic (SMA) ↔ left colic (IMA)
- Superior rectal (IMA) ↔ middle and inferior rectal (internal iliac)
Portosystemic anastomoses
- Varices commonly seen with portal hypertension
- Treatment of portal hypertension
- Varices commonly seen with portal hypertension
- Varices of gut, butt, and caput (medusae)
- Esophagus [1]
- Umbilicus [2]
- Rectum [3]
- Treatment of portal hypertension [4]
- Treatment with a transjugular intrahepatic portosystemic shunt (TIPS) between the portal vein and hepatic vein percutaneously relieves portal hypertension by shunting blood to the systemic circulation.

Portosystemic anastomoses
- For each site of anastomosis
- Clinical sign
- Portal ↔ systemic
- Esophagus
- Umbilicus
- Rectum
- Esophagus [1]
- Clinical sign: Esophageal varices
- Portal ↔ systemic: Left gastric ↔ esophageal
- Umbilicus [2]
- Clinical sign: Caput medusae
- Portal ↔ systemic: Paraumbilical ↔ small epigastric veins of the anterior abdominal wall.
- Rectum [3]
- Clinical sign: Anorectal varices (not internal hemorrhoids)
- Portal ↔ systemic: Superior rectal ↔ middle and inferior rectal

Pectinate (dentate) line
- Formed…
- Above vs. below the pectinate line
- Conditions
- Arterial supply
- Venous drainage
- Innervation
- Lymphatic drainage
- Anal fissure
- Formed where endoderm (hindgut) meets ectoderm.
-
Above vs. below the pectinate line
- Conditions
- Above: Internal hemorrhoids, adenocarcinoma
- Below: External hemorrhoids, anal fissures, squamous cell carcinoma
- Arterial supply
- Above: Superior rectal artery (branch of IMA)
- Below: Inferior rectal artery (branch of internal pudendal artery)
- Venous drainage
- Above: Superior rectal vein –> inferior mesenteric vein –> portal system
- Below: Inferior rectal vein –> internal pudendal vein –> internal iliac vein –> IVC
- Innervation
- Above: Internal hemorrhoids receive visceral innervation and are therefore not painful
- Below: External hemorrhoids receive somatic innervation (inferior rectal branch of pudendal nerve) and are therefore painful
- Lymphatic drainage
- Above: To deep nodes
- Below: To superficial inguinal nodes
- Conditions
-
Anal fissure
- Tear in the anal mucosa below the Pectinate line.
- Pain while Pooping
- Blood on “toilet” Paper.
- Located Posteriorly since this area is Poorly Perfused.

Liver anatomy
- Apical vs. basolateral surface
- Zone I
- Zone II
- Zone III
- Apical vs. basolateral surface
- Apical surface of hepatocytes faces bile canaliculi.
- Basolateral surface faces sinusoids.
- Zone I: periportal zone
- Affected 1st by viral hepatitis
- Ingested toxins (e.g., cocaine)
- Zone II: intermediate zone
- Zone III: pericentral vein (centrilobular) zone
- Affected 1st by ischemia
- Contains cytochrome P-450 system
- Most sensitive to metabolic toxins
- Site of alcoholic hepatitis

Biliary structures
- Gallstones
- Tumors
- Gallstones that reach the common channel at ampulla of Vater can block both the bile and pancreatic ducts.
- Tumors that arise in the head of the pancreas (near the duodenum) can cause obstruction of the common bile duct.

Femoral region
- Organization
- Femoral triangle
- Femoral sheath
- Organization
- Lateral to medial: Nerve-Artery-Vein-Empty space-Lymphatics.
- You go from lateral to medial to find your NAVEL.
- Femoral triangle
- Contains femoral nerve, artery, vein.
- Venous near the penis.
- Femoral sheath
- Fascial tube 3–4 cm below inguinal ligament.
- Contains femoral artery, vein, and canal (deep inguinal lymph nodes) but not femoral nerve.

Inguinal canal (343)

Hernias
- Definition
- Hesselbach triangle
- Direct vs. indirect hernia
- Definition
- A protrusion of peritoneum through an opening, usually a site of weakness.
- Hesselbach triangle
- Inferior epigastric vessels
- Lateral border of rectus abdominis
- Inguinal ligament
- Direct vs. indirect hernia
- MDs don’t LIe
- Medial to inferior epigastric artery = Direct hernia.
- Lateral to inferior epigastric artery = Indirect hernia.

Diaphragmatic hernia
- Definition
- Sliding hiatal hernia
- Paraesophageal hernia
- Definition
- Abdominal structures enter the thorax
- May occur in infants as a result of defective development of pleuroperitoneal membrane.
- Most commonly a hiatal hernia, in which stomach herniates upward through the esophageal hiatus of the diaphragm.
-
Sliding hiatal hernia
- Most common.
- Gastroesophageal junction is displaced upward
- “Hourglass stomach.”
-
Paraesophageal hernia
- Gastroesophageal junction is normal.
- Fundus protrudes into the thorax.

Indirect inguinal hernia
- Goes through the internal (deep) inguinal ring, external (superficial) inguinal ring, and into the scrotum.
- Enters internal inguinal ring lateral to inferior epigastric artery.
- Occurs in infants owing to failure of processus vaginalis to close (can form hydrocele).
- Much more common in males.
- An indirect inguinal hernia follows the path of descent of the testes.
- Covered by all 3 layers of spermatic fascia.

Direct inguinal hernia
- Protrudes through the inguinal (Hesselbach) triangle.
- Bulges directly through abdominal wall medial to inferior epigastric artery.
- Goes through the external (superficial) inguinal ring only.
- Covered by external spermatic fascia.
- Usually in older men.

Femoral hernia
- Protrudes below inguinal ligament through femoral canal below and lateral to pubic tubercle.
- More common in females.
- Leading cause of bowel incarceration.
