Biochem: molecular/cellular bio, genetics Flashcards
uracil is made from deamination of
cytosine
cytosine deamination yields
uracil
leflunomide MOA
blocks dihydroorotate dehydrogenase to prevent conversion of carbamoyl phosphate to orotic acid
hydroxyurea MOA
inhibits ribonucleotide reductase to prevent conversion of UDP to dUDP
substances from glutamine + CO2 to synthesis of CTP
carbamoyl phosphate, orotic acid, UMP, UDP, CTP
substances from glutamine + CO2 to synthesis of dTMP
carbamoyl phosphate, orotic acid, UMP, UDP, dUDP, dUMP, dTMP
MTX, TMP, and pyrimethamine block
dihydrofolate reductase, which normally recycles DHF into THF
5FU blocks
thymidylate synthase, which normally converts dUMP to dTMP
Note: the active form of 5FU is 5FdUMP
azathioprine/6MP MOA
impairs purine synthesis by blocking formation of IMP from PRPP
Mycophenolate and ribavirin MOA
blocks IMP dehydrogenase to prevent conversion of IMP to GMP
probenecid MOA
stimulates conversionof uric acid to urine
Lesch-Nyhan (deficiency, symptoms)
HGPRT: hyperuicemia, gout, pissed off, retardation, dystonia
this sugar unbinds the repressor on lac operon
high lactose
XP is caused by a defect in
NER, which removes oligonucleotides e.g. pyrimidine dimers
Spontaneous deamination is repaired by
BER. AP endonuclease cleaves 5’ end, lyase cleaves 3’ end
Ataxia telangiectasia and Fanconi anemia have a defect in this DNA repair mechanism
NHEJ
function of eukaryotic RNA pol I
rRNA
function of eukaryotic RNA pol II
mRNA
function of eukaryotic RNA pol III
tRNA
what are the functions of the T arm and D arm of tRNA?
ribosome binding; aminoacyl-tRNA synthase recognition
Defect in I-cell disease
failure to add mannose-6-P (defect in n-acetylglucosaminyl-1-phosphotransferase)
Sx of I-cell disease
coarse facies, clouded corneas, restricted joint movement, high plasma level of lysosomal enzymes
this protein is involved in retrograde vesicular trafficking
COP I
this protein is involved in anterograde vesicular trafficking
COP II
this protein is involved in transport between Golgi and lysosomes, and in receptor mediated endocytosis
Clathrin
stain for mesenchymal intermediate filaments
vimentin
this microtuble motor protein does anterograde transport (toward positive end)
kinesin
this microtubule motor protein does retrograde transport (toward negative end)
dynein
ouabin MOA
inhibits Na/K ATPase by binding to K+ site
classical Ehlers-Danlos is a deficiency in this collagen
type V
Menkes (deficiency, consequence, sx)
defective ATP7A (Menkes protein), which absorbs and transports copper Problems with cross-linking tropocollagen into collagen (copper needed for lysl oxidase) Sx: brittle, kinky hair; growth retardation; hypotonia
McCune-Albright syndrome (def, manifestations)
mutation in G-protein signaling. Survivable only if mosaic
Unilateral cafe-au-lait, polyostotic fibrous dysplasia, precocious puberty, multiple endocrine abnormalities
which gene is mutated/deleted in Prader-Willi
paternal gene defect
with maternal imprinting
which gene is mutated/deleted in AngelMan
maternal gene defect
with paternal imprinting
inheritance type Osler-Weber-Rendu
AD
chr for Huntington
chr 4
“Hunting 4 CAGs”
chr for AD PKD
MCC PKD1 on chr 16. PKD1 on chr 4
chr for Marfan
FBN1 on chr 15
chr for NF1
aka von Recklinghausen disease. chr 17
chr for NF2
chr 22
chr for VHL
chr 3
chr for CF
chr 7. often deletion of Phe508
Inheritance ornithine transcarbamylase deficiency
XR
“Oblivious Female Will Often Give Her Boys Her x-Linked Disorders”
inheritance Fabry disease
XR. The one sphingolipidosis that isn’t AR
“Oblivious Female Will Often Give Her Boys Her x-Linked Disorders”
inheritance WAS
XR (“Oblivious Female Will Often Give Her Boys Her x-Linked Disorders”)
inheritance ocular albinism
XR (“Oblivious Female Will Often Give Her Boys Her x-Linked Disorders”)
inheritance G6PD def
XR (“Oblivious Female Will Often Give Her Boys Her x-Linked Disorders”)
inheritance hereditary spherocytosis
AD
inheritance mucopolysaccharidoses (except Hunter)
AR
inheritance Wilson disease
AR
inheritance thalassemias
AR
inheritance glycogen storage diseases
AR
inheritance Kartagener
AR
inheritance myotonic dystrophy type 1
AD
manifestations of myotonic dystrophy type 1
testicular atrophy, frontal balding, arrhythmia
“My Testicles, My Toupee, My Ticker”
repeat for Fragile X
CGG
repeat for Friedreich Ataxia
GAA
repeat for Huntington
CAG
repeat for myotonic dystrophy
CTG
lab findings down syndrome
1st trimester: low PAPP-A, high b-hCG
2nd: HIGH b-hCG, low AFP, HIGH inhibin A, low estriol
lab findings Edwards
(trisomy 18)
low PAPP-A, LOW b-hCG, low AFP, low/normal inhibin A
lab findings Patau
(trisomy 13)
low PAPP-A, LOW b-hCG
chr for FAP
5
chr for cri-du-chat
5
chr for HFE
6
chr for Williams
7, long arm deletion
chr for Friedreich Ataxia
9
chr for Wilms tumor
11
chr for beta globin gene
11
chr for RB1
13
chr for BRCA2
13
chr for alpha globin
16
chr for BRCA1
17