Biochem 1: Amino Acids and Peptides Flashcards

1
Q

an amino acid is

A

a compound that contains both an amino group and a carboxyl group (both are bonded to the alpha-carbon, the one next to the carboxyl group)

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2
Q

alpha carbon on amino acid

A

also bound to hydrogen and the side chain group R

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3
Q

what is the R group of an amino acid important for

A

determines identify of amino acid

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4
Q

stereoisomers of amino acids

A

designated L- or D-

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5
Q

stero properties of amino acids

A

with the exception of glycine, most amino acids are chiral (stereoisomers)
-the vast majority have L-configuration at the alpha carbon

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6
Q

non polar side chain amino acids

A

Ala, Val, Leu, Ile, Pro, Phe, Trp, Met, Gly

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7
Q

neutral polar side chain amino acids

A

Ser, Thr, Tyr, Cys, Gln, Asn

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8
Q

acidic side chain amino acids

A

Glu, Asp

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9
Q

basic side chains amino acids

A

His, Lys, Arg

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10
Q

what are amino acids (in terms of titrations)

A

are weak, diuretic (or triprotic) acids that can be titrated with base

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11
Q

what are the charges of the amino and carboxyl group

A

carboxyl group (-) and amino group (+) are charged at neutral pH

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12
Q

what is special about “free amino acids”

A

alpha-carbon and a-amino groups have titratable protons (some side chains so as well)

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13
Q

individual amino acids can be linked by forming

A

covalent bonds

peptide bonds

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14
Q

define peptide bond

A

the amide bond between the alpha-carboxyl group of one amino acid and alpha-amino group of another amino acid

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15
Q

peptide bonds between amino acids are formed by

A

dehydration synthesis

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16
Q

geometry of peptide bond

A

the four atoms of a peptide bond and the two alpha carbons joined to it lie in a plane with bond angles of 120 degrees about C and N

17
Q

to account for this geometry, a peptide bond is most accurately represented as a

A

hybrid of two contributing structures

resonance structures

18
Q

2 examples of biologically active peptides

A

aspartame: Asp-Phe-methyl ester
glutathione: gamma- Glu-Cys-Gly

19
Q

glutathione: gamma- Glu-Cys-Gly

A

biologically active peptide

  • tripeptide with an unusual gamma-carboy peptide bond linkage
  • important reductant in cells, it helps to protect proteins from oxidative damage