Viruses (#1) Flashcards
“virus” means _______ in latin
poison
genetic elements (DNA or RNA) that replicate independently of a cell’s chromosome, but require a living host in order to reproduce
viruses
viruses are ________ _________ parasites
obligate intracellular parasites
why are viruses called “obligate intracellular parasites?
they damage the cells they take over (parasite) + they are OBLIGATED to be inside the cells to take them over (obligate intracellular)
viruses infect _______ cell types
ALL (every living cell)
viruses are ______ infectious agents
accellular
what do viruses contain?
DNA or RNA
various shapes of DNA/RNA that viruses contain (5):
- single stranded
- double stranded
- linear
- circular
- segmented
shape of DNA/RNA: genome is one or more pieces; allows for reassortment of genome to increase their diversity
segmented
what kind of genome does influenza virus have?
segmented (can take pieces of human, swine, and bird flu to become a near virus – why we get a new vaccine every year)
we get a new flu shot every year because theres so much ___________ (due to segmented genome) that it changes our _________ reactions
reassortment; antibodies
extracellular form of viruses =
virion
the complete virus particle (nucleic acid surrounded by a protein coat, and possibly external layers); moves from host cell to host cell
virion
the protein coat that surrounds the nucleic acid in a virion is called the _______
capsid
most numerous microbe =
viruses!
size range of viruses:
10 - 2300 nm
size range of bacteria:
200 nm - 750,000 nm
virions contain a ________
nucleocapsid
what is a nucleocapsid composed of (3)?
- nucleic acid (DNA or RNA)
- protein coat (capsid)
- some have additional components
the polio virus is the size of a bacterial ________
ribosome
the most common size of viruses is up to ________ nm
400 nm
larger viruses tend to infect ________ and are _________
amoeba; aquatic
large viruses that infect amoeba have _______, which are hairs made of a similar material to peptidoglycan; make amoeba think they’re eating bacteria and then get infected by a virus
fibrils
virus structures can either be ________ or ______
enveloped or naked
what does a naked virus structure include?
- nucleic acid
- capsid (composed of capsomeres)
- can possibly have peplomers/spikes
what does an enveloped virus structure include?
- nucleic acid
- capsid
- glycoprotein (spikes/peplomers)
- envelope
what is the capsid composed of?
capsomeres
what is the envelope made of?
lipid bilayer
what are spikes made of?
glycoproteins
part of virus structure: protects nucleic acid and may have an attachment role as well
capsid
type of virus structure: only have nucleic acid + capsid (can possibly have protrusions)
naked virus
type of virus structure: has a LIPID bilayer and protein protrusions
enveloped virus
types of virus SYMMETRY (3):
- helical
- icosahedral
- complex (both)
virus symmetry refers to its _______ symmetry
capsid (does NOT include envelope)
type of virus/capsid symmetry: tube; if it has an envelope, it may look spherical
helical symmetry
type of virus/capsid symmetry: polyhedron – 12 equilateral triangles + 12 vertices; most efficient way to enclose a space; could also have an envelope
icosahedral symmetry
example of virus w/ helical symmetry =
tobacco mosaic virus
the structural subunits of capsids, called ________, is just long enough to cover the nucleic acid; all the same type of protein in helical symmetry
capsomeres
type of virus/capsid symmetry: no JUST helical or icosahedral; might have both or some other symmetry
complex symmetry
example of a virus w/ complex symmetry that has a STRANGE shape =
vaccinia (pox virus)
example of a virus w/ complex symmetry that has BOTH helical + icosahedral symmetry
T4 bacteriophage
complex symmetry that has BOTH helical + icosahedral symmetry
binal symmetry
T4 bacteriophage has complex symmetry that is term:
binal symmetry
the capsid head of T4 bacteriophage looks like _________ symmetry while the sheath looks like ________ symmetry
icosahedral; helical (tube)
theres ______-_______ general of viruses
200-300
of virus species:
1500 species
classification of viruses is based on (5):
1) what they infect (animals, amoeba, bacteria)
2) nature of virion (naked/enveloped)
3) nucleic acid (DNA, RNA, linear, circular, etc.)
4) strategies of infection + reproduction
5) nucleotide sequence
central dogma of biology:
DNA –> mRNA –> protein
T/F: all living cells are double-stranded DNA
true
the one strand of DNA used to make mRNA is called what?
antistrand
types of viral GENOMES for ssRNA viruses (2):
- positive sense
- negative sense
positive and negative sense genomes are only for what type of virus genome?
ssRNA (single-stranded RNA) viruses
type of ssRNA virus genome: genome and mRNA are the SAME sequence
positive sense (+, plus strand)
type of ssRNA virus genome: genome and mRNA are COMPLIMENTS to one another (ex: AUG –> UAC)
negative sense
example of virus with negative sense genome =
flu virus
mRNA is always in the ______ sense
positive
outer, flexible membranous layer
viral envelopes
lipids and carbohydrates in the viral envelope are usually _______ derived
host
viruses can acquire their envelope from their host through a process called _______
budding
process where virus exits the host cell and uses spikes to pull lipid bilayer with it
budding
very few ___________ have an envelope
bacteriophages
most bacteriophages have a ________ type of genome
dsDNA
envelope ______ may project form the envelope surface
proteins
protein projections on the envelope surgace
spikes or peplomers
spikes or peplomers are ________ encoded
viral (makes them inside the cell first)
functions of spikes (5)
- viral attachment to host cell (very specific)
- enzymatic activity
- role in nucleic acid replication
- identification of virus
- release of virus (nervinadose spikes)
the spikes viral attachment to host cells is very _______
specific
spike that the flu virus uses to attach to respiratory cells SPECIFICALLY; can attach to RBCs (blocking WBCs from attacking it)
Hemagglutinin spike
what spike is involved in the release of the virus?
nervinadose spikes
the ______ virus have nervinadose spikes
flu
Tamaflu inhibits the fomration of _______ spikes in order to decease the duration of the flu; prevents more viruses from spreading to other parts of the body through release
nervinadose spikes
most enveloped viruses are _______ viruses
animal
animal viruses don’t have a cell wall but they have a ________ _______
lipid bilayer
animal viruses are released via ________
budding
animal viruses type of genome:
dsDNA or ssRNA
specific polymerase that virus brings with it; reads NEGATIVE sense RNA virus genome and makes it into POSITIVE sense mRNA; host cells don’t have this
RNA-dependent RNA polymerase
spikes are _______
antigens
viral replication/reprod. steps (5):
- attachment (adsorption of phage virion)
- penetration of viral nucleic acid
- synthesis of viral nucleic acid + protein
- assembly and packaging of new viruses
- cell lysis and release of new virions
the viral replication mechanism used depends on viral ________ and ________
structure + genome
similar steps of viral replication for all viruses (6):
1) attachment
2) entry (of viral genome)
3) uncoating of genome
4) synthesis
5) assembly
6) release
attachment of viruses is specific (not random at all) and uses common ______ ________ for receptors
cell components (ex: LPS, peptidoglycan)
types of entry/penetration of viral nucelic acid into the host cell (3)
- injection
- endocytosis
- fusion of virion to cell membrane
which method of entry do most bacteriophages used to penetrate their genome into the host cell?
injection
which method of entry do most animal viruses/eukaryotes used to penetrate their genome into the host cell?
endocytosis + fusion
method of entry; cell is tricked into thinking the virus is food and brings it into the cell
endocytosis
step of viral replication: removes layer from nucleic acid (viral genome) so it can do its job; takes CAPSID off
uncoating of genome
T/F: if you INJECT DNA into the host cell; the nucleic acid is already uncoated from the capsid
true
step of viral replication: replicates its genome makes new nucleic acids + proteins; makes new virions and enzymes to take over the cell
synthesis
during fusion of the virion to the host cell membrane, the _______ is uncoated but you still have to uncoat the ________
envelope; capsid
if a virus uses fusion, uncoating of the capsid occurs in the __________
cytoplasm
in some ANIMAL cells (when using fusion), uncoating of the capsid from the nucleic acid may not occur until the ________
nucleus
methods of the release of new virions (3):
- lyse
- exocytosis
- budding
the genome of a negative sense RNA virus:
a) has the same sequence as the viral mRNA
b) has the complementary sequence of the viral mRNA
c) has the reversed sequence of the viral mRNA
d) is used as the viral mRNA
b) has the complementary sequence of the viral mRNA
viral replication phases (2):
- eclipse
- maturation
viral replication phase: making early viral enzymes to take over the host cell + to replicate its genome
eclipse
viral replication phase: assembling all new virions
maturation