Sanger DNA Sequencing Flashcards

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1
Q

Who is Sanger

A

Worker out the structure of insulin
Determing sequences of DNA

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2
Q

What are the building blocks of DNA?

A

Adnine
Thymine
Cytosine
Guanine
Phosphate backbone

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3
Q

What is DNA polymerase?

A

The primary enzyme which catalyses the linkage of the 3’ hydroxyl group of the end nucleotide to the 5’ phosphate of nucleotide to be added

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4
Q

What do dideoxyribonucleotide triphosphates lack?

A

Oxygen on the 3’

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5
Q

What are dideoxy building blocks?

A

ddATP
ddCTP
ddGTP
ddTTP

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6
Q

What are ddATP, ddCTP, ddGTP and ddTTP building blocks for?

A

Dideoxynibonucleotides

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7
Q

What is the first stage of Sanger sequencing?

A

Denature dsDNA using heat

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8
Q

What is the second stage of Sanger sequencing?

A

Make multiple copies of a segment

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9
Q

What is the third stage of Sanger sequencing?

A

Attach a primer

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10
Q

What is the fourth stage of Snager sequencing?

A

Add four polymerase solutions

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11
Q

What is the fifth sage of Sanger sequencing?

A

Grow complementary chains until termination dye

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12
Q

What is the sixth stage of Snager sequencing?

A

Denature the grown chains?

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13
Q

What is the seventh stage of the Snager sequence?

A

Electrophorese the four solutions

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14
Q

Which way do you read the DNA strand sequence - 5’ to 3’ or 3’ to 5’?

A

5’ to 3’

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15
Q

What are the three updates of Snager sequencing?

A
  1. PCR with fluorescent chain-terminating ddNTP’s
  2. Size seperation by capillary gel electrophoresis
  3. Laser excitation & detection by sequencing machine
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16
Q

What are the limits of Sanger sequencing?

A

Poor quality in the first 15 - 40 bases due to primer building
Deteriorating sequences after 700 - 900 bases
‘Quality trimming’ can lead to lost information
Realistically limited to 300 - 1000 bases in a single reaction