Part III: Introduction to Bacteriology Flashcards
detection of bacteremia, sepsis, fever of unknown origin in blood collection/phlebotomy
Blood
presence of viable bacteria in blood
Bacteremia
Common agents for Bacteremia
CoNS (Coagulase-Negative Staph) Saphrophyticus and epidermidis
H.influenzae
S.aureus
E.coli
B. fragilis
presence of viable bacteria in blood that causes SYSTEMIC INFLAMMATORY INFECTION
Septicemia
Decontamination of puncture site uses: (3)
70-95% alcohol
Chlorhexidine
Iodophor (1 min)
BLOOD common contaminants
DiBa EVA
Diptheriae spp.
Bacillus spp.
S. epidermidis
Viridans streptococci
p. Acnes
Blood-Broth ratio is:
1:10
BLOOD specimen media used
Brain Heart Infusion
Trypticase Soy Broth
Brucella Broth
BLOOD anticoagulant uses
0.25% Sodium Polyethanol Sulfonate
Addition of _______ in anticoagulant SPS will neutralize effect of SPS
1% gelatin
Anticoagulant SPS will inhibit growth of
Negative VMA
Neisseria
G. vaginalis
S. monoliformis
P. anaerobious
Other anticoagulants:
- Sodium amylosulfate
- Heparin
- 0.5-1% Sodium citrate
additive that CANNOT BE USED FOR BLOOD CULTURE
EDTA
BLOOD CULTURE
Heparin is usually used for
- viral agents
- capable of inhibiting gram (-) bacteria and yeast
Specimen used for the detection of Respiratory Tract Infection
Sputum
Sputum must be handled in
BSC Cabinet (BSL-3)
Specimen retrieved for Sputum Culture
Deep Cough 5-10 mL
Poor collection of sputum is confirmed in presence of
Alveolar macrophange
Columnar cells
Sterile sputum
Centrifugation –> process
Non-sterile sputum undergoes
Digestion - Decontamination - centri -process
BARTLETT’S CLASSIFICATION
Saliva
> 10
< 25 PMN
BARTLETT’S CLASSIFICATION
Sputum
< 10 PMN
> 25 PMN
Sputum Gold Standard sterilization
Digestion: n-acetyl-l-cysteine
Decontamination: NaOH
Other decontamination agent for Sputum
5 % oxalic acid
Sputolysin
Zephiran Trisodium Phosphate
4% NaOH
generally for aerobic bacteria, least preferred for anaerobic culture
SWAB
Major throat pathogen
S. pyogenes
SWAB
Clinical Significance of S.pyogenes
Pharyngitis
scarlet fever
erysipelas
SWAB
Virulence factor of S.pyogenes
M protein
SWAB
M protein of S.pyogenes is encoded by what gene
emm gene
SWAB
Major throat normal flora
Viridans Strep
SWAB
Viridans strep.
Hemolysis =
Optochin =
Neufeld Quellung’s Test =
Bile Esculin =
Hemolysis = Alpha
Optochin = Resistant
Neufeld Quellung’s Test = Neg
Bile Esculin = Neg
Major throat flora: Viridans strep causes
SBE
Sub-acute Bacterial Endocarditis
NASOPHARYNGEAL SWAB to detect
B. pertussis
B. pertussis is a carrier state of
N.meningitis (5-29 yrs old)
H. influenzae
SAR-CoV
MRSA
NASOPHARYNGEAL SWAB uses materials like (3)
- Dacron
- Rayon
- Calcium alginate
NASOPHARYNGEAL SWAB that is toxic to Neisseria
Cotton
NASOPHARYNGEAL SWAB that is toxic to VIRUSES
Calcium alginate
NASOPHARYNGEAL SWAB
Always a pathogen
Neisseria gonorrhoeae
NASOPHARYNGEAL SWAB
- Can be a normal flora
- Nasopharyngeal positive result can be non-significant
Neisseria meningitidis
manner of collection is thru LUMBAR TAP
CSF
CSF Sequence of Tube Collection
Tube 1: CC
Tube 2 : Microbio
Tube 2: Hema
CSF Specimen Handling
Storage Temp:
Transport Temp:
Storage Temp: 37
Transport Temp: 25-30
CSF Specimen must be refrigerated
false
CSF culture media
BAP
CAP
CSF usual pathogens
I Love SPAM
H. influenzae
Listeria
S. pneumoniae
S. agalactiae
N. meningitidis
– to detect enteric pathogens
Stool
Stool culture media
SSA
EMB
MacConkey Agar
Alternative Specimen for enteric pathogen
Rectal Swab
STOOL
Common pathogen
Shige Enter Viber Col JeSa
Shigella
Enterocolitica
Vibrio
E.coli
C. jejuni
Salmonella
submitted to detect UTI, usual request is culture, colony count, and sensitivity
URINE
URINE
Most common cause of UTI
E.coli
Most common cause of UTI in young females
S. saprophyticus
Urine must be processed within
1 hr or refrigerated for 24 hrs
URINE
Preferred manner of collection:
Mid-stream clean catch
URINE
Mode collection if patients are infants/ children
SUPRAPUBIC urine
URINE COLONY COUNT Formula
Colonies counted x Dilution
URINE COLONY COUNT
Use of ________________CALIBRATED LOOP
1uL/10uL
URINE COLONY COUNT
Dilution factor is 1000 using
1 uL
URINE COLONY COUNT
Dilution factor is 100 using
10 ul loop
URINE Colony count >100,000
positive for UTI
specimen to collect if the patient is intubated /on a ventilator
Endotracheal aspirate
Type of Culture Media
Sabouraud’s Dextrose Agar
(fungi
General purpose
Type of Culture Media
Carrot Broth
Enrichment media
Type of Culture Media
Alkaline peptone water
Enrichment media
Type of Culture Media
HEA, XLD, TCBS
Differential Media
Type of Media
Transgrow
Transport Media
Type of Media
TSI, LIA, ONPG, Urea agar, Simmon Citrate Agar
Biochemical Test
Motility Test Media
SIM and MIO
Type of Media
Bacteroides , Bile Esculin, KVLB (Kanamycin Vancomycin Lake Blod)
Media for Anaerobes
A device that encloses a workspace
BIOSAFETY CABINET
HEPA filter can remove objects larger than
0.3 um
system is entirely open, sterilizes air to be exhausted; least effective
CLASS I
a.k.a laminar flow, the type that is used in most laboratories
CLASS II
exhaust air inside the room
70% of air is recirculated
BSC CLASS IIA
exhaust air outside the building
BSC CLASS IIB
- most effective with gloves attached & sealed to the cabinet
- entirely closed system
CLASS III
Poses MINIMAL risk to lab personnel
BSL-1
BSL-1 : Precautions
Practice standard Laboratory Techniques
BSL-1: Agents
B.subtilis
M.gordonae
E. aerogenes
Poses MODERATE risk to staff
through ingestion, mucous membrane, percutaneous exposure
laboratory acquired infections
BSL-2
BSL-2: Precautions
- Agent from BSL-1
- Warning Signs
- Wearing of Gown, gloves, or face shields
- Decontamination of waste
BSL-2 : Agents
Shigella
Salmonella
S.aureus
HBV
HIV
Poses HIGH Risk
acquired through INHALATION
Aerosol transmission
BSL-3
BSL-3 : Precautions
- Sustainable airflow
- Wearing of PPE
BSL-3: Agents
Systemic Mycoses
M. tuberculosis
Coxiella burnetiid
St. Louis Encephalitis virus
Poses EXTREME RISK
Causes life threatening diseases
BSL-4
BSL-4: Precautions
- laboratory must be situated in a different building
- Full body PPE
complete destruction and removal of all forms of all microbial life INCLUDING THE SPORE
Sterilization
Sterilization:
Physical
Use of moist heat
Use of dry heat
Filtration
Ionizing radiation
Sterilization:
Chemical
chemical sterilants (biocides)
- Ethylene oxide
STERILIZATION
Physical - Moist of Heat: (3)
Autoclaving
Inspiration
Tyndallization
STERILIZATION
Physical - Dry Heat: (4)
Oven
Cremation
Incineration
Flaming
STERILIZATION
Physical - Filtration (3)
Millipore
Nucleopore
HEPA filter
STERILIZATION
Physical - Ionizing radiation
exposure to gamma rays
destruction and removal of
pathogens but not necessarily all microorganisms and their spores
Disinfection
DISINFECTION
Physical (2)
Boiling
Pasteurization
Exposure to UV rays
DISINFECTION
Chemical (2)
Disinfectant
Antiseptics
STERILIZATION done through
Steam under pressure (Autoclave)
121 deg 15-30mins 15 psi
sterilizing use and unused media
121 deg 30mins 15 psi
for contaminated materials
132 deg 30-60mins
for infectious medical waste
protein particles causing neurological diseases in animals and man
NOT KILLED BY AUTOCLAVING
PRIONS
Prions causes
Borine Spongiform Encelopathy
Mad Cow Disease
Creutzfeldt Jakob Syndrome
Process to do To Eliminate Prions
Extended steam sterilization in
conjunction with 1M SODIUM HYPCHLORITE
100 degC 30 mins 3 days
TYNDALLIZATION
75-80 degC 2 hrs for 3 days
INSPISSATION
Recommended in sterilizing media with increased
protein such as Loweinstein Jensen, Petragnani, ATS
INSPISSATION
Arnold sterilizer and flowing steam
TYNDALLIZATION
Thickening Through Evaporation
INSPISSATION
BIOLOGICAL INDICATORS
Autoclave
(Geo)Bacillus stearrothermophilus
BIOLOGICAL INDICATORS
Oven
Bacillus subtilis var niger
BIOLOGICAL INDICATORS
Ionizing radiation
Bacillus pumilus
BIOLOGICAL INDICATOR
Ethylene oxide
Bacillus subtilis var. globijii
Standard disinfectant:
PHENOL
Best to remove blood spills
Sodium hypochlorite
CDC recommends ______ dilution for porous surfaces
1:10 dilution
dilution for hard surfaces, smooth surfaces
1:100
Disinfection contact time to remove HBV
10 minutes
Disinfection contact time to remove HIV
2 minutes
Commonly used antiseptic:
70% alcohol
Best antiseptic
IODOPHOR
Burning of infectious materials into ashes
INCINERATION
Burning of body into ashes
CREMATION
Incubator, water bath,
refrigerator
Freezer, heating block
Monitor temperature daily
Autoclave
Monitor spore at least weekly
Autoclave temperature
Daily
GASPAK jar
Check every use
Centrifuge function/ rpm
Every 6 months / monthly
Microscopes
Clean and adjust objectives 4 times annually / as needed
Weighing balance
Check annually