Molecular Genetics Flashcards
Central Dogma
DNA -> RNA -> Proteins
Nucleotide
Deoxyribose, phosphate group, nitrogenous base
Purines
Adenine, Guanine (Larger, two-ring)
Pyrimidines
Cytosine, Thymine, Uracil (1 ring)
DNA Directionality
3’ -> 5’
T-A
Two hydrogen bonds
G-C
Three hydrogen bonds
DNA helicase
Breaks the hydrogen bonds between nitrogenous bases
Replication Fork
Opening in the DNA molecule created by DNA helicase
Topoisomerase
Removes the strain by cutting, twisting, rejoining the strands of DNA
Replication Bubble
The replication fork passed a portion of DNA, where the two strands are separated
DNA polymerase
Reads the parent DNA strand and creates a complementary, antiparallel strand, reads 3’->5’ (creates 5’->3’)
Leading strand
3’ end facing toward the replication fork
Lagging strand
3’ end facing away from the replication fork
Okazaki Fragments
Short fragments of synthesized DNA, joined together by DNA ligase
RNA
ribose, uracil, single-stranded
mRNA
Carries the complement of a DNA sequence
tRNA
Recognizes mRNA codon and amino acid
rRNA
Ribosomal machinery, most abundant
Transcription
RNA polymerase binds to the DNA template, promoter region, TATA box, and transcription factors assist
Post-transcriptional Processing
Hetero-nuclear RNA (pre-RNA), introns spliced out leaving exons, 5’ guanine cap and 3’ poly-A tail added, leave the nucleus
Stop Codons
UAA, UGA, UAG
Translation
Initiation, elongation, translocation, termination
Initiation
Small ribosomal subunits binds, start codon, methionine, complex is bound
Elongation
A site (holds), P site (peptide bond formation), E site (expelled)
Translocation
Ribosome advances three nucleotides away
Post-translational modifications
Phosphorylation, Carboxylation, Glycosylation, Prenylation
km
Substrate concentration needed to fill half of the enzyme’s active site, assess enzyme affinity for a substrate
Higher km
Higher concentration of the substrate to reach 1/2Vmax, lower enzyme affinity
Competitive Inhibition
Same Vmax, Higher Km
Ligases
Catalyze addition or synthesis reactions, require ATP, joining (ligation)
Isomerases
Rearrangement of bonds, oxidoreductase, transferase, lyases
Lyases
Cleavage into two molecules, do not require water
Hydrolases
Breaking of a compound into two molecules using the addition of water
Oxidoreductases
Oxidation-reduction reactions, transfer of electrons, dehydrogenase, reductase
Transferases
Movement of a functional group, kinases (ATP)