metabolism Flashcards
proteins digested into
amino acids
polysaccharides digested into
monosaccharides
TAG digested into
fatty acids
what organ plays a central role in processing and distribution of nutrients, and supplies nutrients to tissues via bloodstream
liver
Autotrophs
(“self-feeders”) make organic materials from inorganic materials in the environment
* The biosphere’s producers — Plants
Heterotrophs
(“other-feeders”) use compounds produced by others
* The biosphere’s consumers — Animals
What is Metabolism
Metabolism is the sum of the chemical reactions that convert nutrients
into energy and complex molecules within cells
Metabolism comprises hundreds of chemical reactions, catalysed by _____, organized into discrete ________ which operate in an integrated and coordinated manner
enzymes
metabolic pathways
flows of metabolic pathways
inputs; outputs; passage along pathways
pools of metabolic pathways
amounts of molecules
Filled (supplied) or emptied (by demand) by catabolic and anabolic pathways
space and time of metabolic pathways
not all pathways necessarily occur at the same time, or in the same place
3 main energy-containing nutrients
carbs, fats and proteins
3 reasons metabolism must be regulated
- to prevent “futile cycles”
- to respond to physiological needs
- to respond to changes in energy demand
all metabolic pathways must have overall ____ free energy
negative
can anabolic pathways simplu reverse catabolic pathway
NO
glycolysis, substrate and product
1 glucose –> 2 molecules of pyruvate, makes 2ATP
glycolysis takes place in
cytosol
pyruvate can yield (3 things)
- Ethanol — by anaerobic fermentation in yeast
- Lactate — by reduction in anaerobic conditions in muscle
- Acetyl CoA — by oxidation in aerobic conditions
acetyl coA is a 2C acetyl croup esterified to
co-enzyme A
aceytl coA has a central role in
metabolism
acetyl coA is put into CAC and what energy do you get out
NADH
what is beta oxidiation
breakdown of fat to get NADH; fatty acid trimmed 2 C at a time to get acetyl coA
where does CAC occur
mitochondria
where does beta oxidation occur
mitochondria
3 main VFA
acetate
propionate
butyrate
enzymes from _____ and _____ digest dietary peptides and amino acids (protein)
stomach and pancreas
Protein breakdown (hydrolysis back to amino acids) occurs constantly in cells by two main pathways:
- Cytosolic pathway: involves ubiquitin and the proteasome
- Lysosomal pathway: proteins are taken up by lysosomes and hydrolysed by
proteases (cathepsins)
amino acids split into
amine group –> urea cycle –> urea
and
carbon skeleton –> multiple fates such as ketone bodies, acetyl coA, glucose, CO2
what is purpose of CAC etc making NADH
to produce lots of ATP; in oxidative phosphorylation (ETC)
NADH used to pump protons in to out of mitochondria; creates high proton concentration out of cell, then ATP synthase brings protons back in and this energy phosphorylates ADP into ATP
is pyruvate dehydrogenase reversible
NO its irreversible
can acetyl coA turn back into glucose
NO
gluconeogenesis
Plants: 3-phosphoglycerate
(Calvin cycle) → glucose
Animals: non-carbohydrate
precursors → glucose
– important in fasting
fats breakdown vs fatty acid synthesis
breakdown (beta oxidation)
location: mitochondria
coenzyme: NAD+/ FAD
enzymes: 4
synthesis
location: cytoplasm
coenzyme: NADPH
enzymes: 2
protein synthesis
Ribosomes translate mRNA and synthesize protein
enzymes lower
activation energy
mammalian genome has ~____ genes that code for proteins
30 000
in eukaryotes can one gene code for several proteins
yes
* post-translational modification
* alternate splicing of different exons in the mRNA transcript
To control the amount of a protein in a cell
– control gene expression
(stable vs inducible genes: transcription factors controlled by metabolites, hormones, etc) and
- control protein degradation
Some proteins live long, some ~few minutes
Covalent modification alters protein _____ → regulates activity
conformation
what is a reversible way of regulated proteins
Common important modification: phosphorylation (addition of phosphate group) of serine, threonine or tyrosine side chains
protein kinases
phosphorylates proteins; adds a phosphate group, which changes the structure of proteins therefore changing the activity of that
protein
Each has a specific target protein (substrate) that it phosphorylates, & specific effectors; some have broad, some
narrow, specificity
what is an irreversible way to regulate proteins
activation of a precursor: ie inactive forms of proteins exist and then can be activated (irreversible)
protein kinase examples and what they are activated by
- protein kinase A; activated by cAMP
- phosphorylase kinase; activated by protein kinase A and Ca2+
- protein kinase C; activated by Ca2+
- protein tyrosine kinases; activated by insulin receptorsand others
protein phosphatases
enzyme that cuts off phosphate groups from proteins (opposite of protein kinases)
protein control of activity by non-covalent binding of
effector; may enhance or inhibit activity (allosteric regulation like a built in regulatory network, feedback)
- Allosteric activation, inhibition
- Competitive inhibition
timescale:
less than 1 second
- Activation of preformed precursor proteins
- Activation/inactivation by reversible covalent
modification
time scale
seconds to minutes
- Synthesis of new protein in response to signals (e.g. hormones)
timescale
minutes to hours
- Major changes to the overall protein profile of a tissue (e.g. in response to dietary changes, exercise); rebalancing of synthesis and breakdown
time scale
days to weeks
Erythrocytes
carry O2 from lungs to tissues and CO2 from tissues to lungs
Plasma
carries nutrients (glucose, amino acids, nucleosides, etc) around the body for uptake by tissues; and
Carries metabolites/waste products to (e.g. toxins, glutamine) and from (e.g.
urea) liver; urea goes to kidney for excretion. Also carries hormones
blood delivers what nutrients to brain
glucose, ketone bodies
blood delivers what nutrients to cardiac muscle
glucose, FA, ketone bodies
blood delivers what nutrients to skeletal muscle
glucose, FA, ketone bodies, amino acids
plasma proteins are involved in
blood coagulation and fibrinolysis
albumin (plasma protein)
carries fatty acids and many other molecules
lipoprotein (plasma protein)
carry TAGs and cholesterol esters
Most plasma proteins are synthesized in the
liver
After absorption from the gut, sugars (monogastrics; mainly glucose) and amino acids, VFAs, and some TAG, pass via the blood to the
liver
most TAG is stored in
adipose tissue via lymphatic system
(some in liver)
Hepatocytes transform nutrients into
fuels and precursors for other tissues
Kinds & amounts of nutrients supplied by the
liver vary with
diet and the time between feeds
liver: Demand by non-hepatic tissues depends on
the organ and on the activity of the animal
why does the liver have remarkable metabolic flexibility
- Builds up stores when fuel is plentiful; releases when needed
- Interacts with other organs via the blood, helped by hormones
GLUT2
glucose transporter ensures that hepatic glucose
concentration is the same as in blood
Glucose is phosphorylated by _____ to glucose-6-phosphate when it gets into liver
glucokinase (glucose-6-phosphate is negative and large and basically traps the glucose inside the liver cell)
then turned to glycogen
liver stores glucose as
glycogen
adipose tissue stores ____ and supplies ____
TAGS
fatty acids
adipose tissue is ___% of young mammals weight
15-25%
do all animals need blood glucose
YES; RBCs and brain rely on it!
cats and ruminants blood glucose
blood glucose doesn’t come from the gut
cats: * No correlation with food ingested in the previous 2h * Both normal cats and diabetic cats
ruminants: * ~80–90% of absorbed VFAs are taken up by the liver * Major consequences for hormonal control
rumen microbes ferment
cellulose –> VFAs
horse digestion
digestible carbs –> stomach –> glucose
fat –> small instestine –> FAs
fermentable fiber –> large intestine –> VFAs
rumen microbes
Cellulytic bacteria, protozoa hydrolyze cellulose
rumen microbes turn cellulose
–> cellobiose –> glucose –> VFAs
fate of VFAs
bloodstream –> oxidized –> energy
also –> amino acids and vitamins
acetate
VFA, for energy and FA synthesis
propionate
VFA, forms glucose in gluconeogensis
butyrate
VFA, for energy and FA synthesis, some metabolized in rumen wall and liver then to tissues
VFA absorption
Passive diffusion
* 75% reticulo-rumen
* 20% omasum and abomasum
* 5% small intestine