MCAT BIO CH.6 PART 1 Flashcards
What is the function of nucleus?
Contain and protect DNA; transcription; partial assembly of ribosomes
Number of membranes surrounding nucleus?
2
What is the function of mitochondria?
Produce ATP via the krebs cycle and oxidative phosphorylation
Number of membranes surrounding mitochondria?
2
What is the function of ribosomes?
Synthesis of proteins
Number of membranes surrounding ribosomes?
0
What is the function of the RER?
Synthesis/modification of secretory, membrane-bound and organelle proteins
Number of membranes surrounding RER?
1
What is the function of the SER?
Detoxification and glycogen breakdown in liver; steroid synthesis in gonads
Number of membranes surrounding SER?
1
What is the function of the Golgi apparatus?
Modification and sorting of protein, some synthesis
Number of membranes surrounding Goldgi apparatus?
1
What is the function of the lysosomes?
Contain acid hydrolase that digest various substances
Number of membranes surrounding lysosomes?
1
What is the function of the peroxisomes?
Metabolize lipids and toxins using H2O
Number of membranes surrounding peroxisomes?
1
What is the nucleus surrounded by?
The nuclear envelope
What occurs in the nucleus in eukaryotes? Where does translation occur?
Replication, transcription and splicing; translation
Eukaryotic genome are organized into________, while the genome of prokaryotes is_______?
Linear molecules of double-stranded DNA; single circular DNA molecule
What is a chromosome?
Separate linear DNA molecule
What is a locus?
Specific location on the chromosome where the genes can be mapped
What happens to the gene in heterochromatin form?
Turned off and inaccessible
What happens to the gene in euchromatin form?
More loosely packed and allow genes to be activated
What is the purpose of nuclear matrix?
To support and provide overall structure and regulating gene expression
What are “domains” in the nucleus?
Chromosomal regions
What is the purpose of the nucleolus?
Ribosome factory
What does the nucleolus include?
RNA polymerases, rRNA, protein components the ribosome
What role would the loops of DNA in the nucleolus play?
DNA will serve as template for ribosomal RNA production
The nucleolus is responsible for the transcription of mRNA, tRNA and rRNA by_____?
Transcription of rRNA by RNA polymerase I
Transcription of tRNA and mRNA are done by RNA poly I?
False: other polys
How is the ribosome assembled in the nucleolus?
Partially
When does the ribosome become active, based on its production?
Remains inactive untila assembly is completed in the cytoplasm
What separates the nucleus from the cytoplasm?
Nuclear envelope
How many layers are composed of the nuclear envelope?
Two lipid bilayer membranes
What is the space between the nuclear membranes contiguous with?
With the lumen of the ER
Where are nuclear pores located?
Punctuated the nuclear envelope
What is the function nuclear pores?
Allows passage into and out of the nucleus
What size of molecules can enter the nucleus by diffusion?
Molecules smaller than 60 kilodaltons
What sequence do larger proteins require to enter the nucleus?
Nuclear localization sequence
What happens to proteins with the nuclear localization sequence?
Translated into the cytoplasm and then imported into the nucleus by specific transport mechanisms
Does RNA transport itself out through diffusion?
No, through a specific transport system rather than freely diffusing into the cytoplasm
The mitochondrion is the site of ______?
ATP synthesis and oxidative phosphorylation
What does the matrix include, what type of enzymes?
Pyruvate dehydrogenase and the enzymes of the Krebs cycle
What occurs in the inner membrane of the mitochondria?
Electron transport chain and ATP synthase
What are cristae, based on the mitochondria?
Inner membrane projections into the matrix
What from the inner membrane in mitochondria allows for the proton gradient for ATP synthesis?
Its impermeable to the free diffusion of polar substances
What are structural components of the outer membrane of mitochondria?
Smooth, contains large pores that allow free passage of small molecules
What is the space between the mitochondria membranes?
Intermembrane space
Why is the inner membrane folded into cristae in mitochondria?
Increase surface area
How is the genome of mitochondria?
A single circular DNA molecule
What does the mitochondria genome code for?
rRNA, tRNA, proteins, and ETC components, parts to he ATP synthase complex
What is the evolutionary theory of mitochondria?
Endosymbiotic Henry of mitochondria; independent unicellular organism living within larger cells
What does mitochondrial exhibit that is important with reproduction?
Maternal inheritance
Why is the mitochondrial only inherited from the mother?
The cytoplasm of the egg becomes the cytoplasm of the zygote
What does the sperm contribute in reproduction?
Only genomic nuclear DNA
Why is the rough ER called rough?
Large number of ribosomes bound to its surface
What is the purpose of the ribosomes for the rough ER?
Site of protein synthesis for proteins targeted to enter the secretory pathway
What type of enzymes may be present in the smooth ER although its usually not actively involved in protein processing?
Steroid hormone biosynthesis enzymes for gonads or degradation of environmental toxins in the liver
What does the ER do that’s important with protein localization?
Key role in directing protein traffic to different parts of the cell
Where do proteins that are translated on free cytoplasmic ribosomes go?
Peroxisomes, mitochondria, nucleus or in cytoplasm
Where do proteins that are translated on the rough ER ribosomes go?
- Secreted into extracellular environment
- Integral plasma membrane proteins
- In the membrane or interior of the ER, Golgi apparatus or lysosomes
Based on the rough ER, which membranes is it in contiguous with?
Interior of the ER, Golgi Apparatus, lysosomes, and the extracellular environment
Proteins synthesized on the rough ER are transported in vesicles to which location first?
From the ER to the Golgi apparatus
After the proteins go to the Golgi apparatus, where does it go? (Based on ER)
To the plasma membrane or lysosome
What decides if a protein is translated on the rough ER or not?
Determined by the sequence of the protein itself
All proteins, even the ones from the rough ER, begins translation where?
Start translation in the cytoplasm
Which proteins have the signal sequence to continue translation on rough ER?
Secreted proteins and lysosome proteins
Where is the signal sequence from ER ribosomal proteins?
Amino acid sequence at their N-terminus
How is the signal sequence from ER ribosomal proteins recognized? What does it then do?
By the signal recognition particle (SRP); binds to the ribosome
One the ribosome-SRP complex is made, what occurs to it, based on ER?
Rough ER has STP receptors that dock the ribosome-SRP complex on the cytoplasmic surface along with the polypeptide and the mRNA
What happens to the polypeptide since the complex gets bound to the STP receptors, based on ER?
Translation pushes the polypeptide into the ER lumen, signal peptide first
What happens after rough ER ribosomal translation is complete?
Signal peptidase removes the signal peptide from the polypeptide
Where is the signal peptidase located?
In the ER
What happens to secreted proteins after the signal peptide is removed, based on ER?
The protein is transported in the interior of vesicles, through the Golgi, to the plasma membrane, released by exocytosis
What are transmembrane domains and where are they located?
Hydrophobic amino acid residues located on integral membrane proteins
Where do the transmembrane domains pass through, based IMN (integral membrane proteins)?
Through lipid bilayer membranes
What are transmembrane domains basically, based on IMN?
Signal sequences found int he interior of the protein but NOT AT THE N-TERMINUS
During translation, the transmembrane domains are threaded through what?
The ER membrane
What type of initial post-translation modification of proteins may occur in the rough ER?
Disulfide bond formation, glycosylation
What is the default target for proteins that go through the secretory path based on protein traffic for ER?
Plasma membrane
What are needed for the protein to end up elsewhere than the plasma membrane (ex. Golgi, ER, lysosome)?
Targeting signals
Proteins that are made in the cytoplasm but need to be sent to an organelle are apart of the secretory pathway. T/F
False
What sequence do proteins made in cytoplasm but need to be transported to a different organelle, need?
Localization signals
What is the structure of the Golgi Apparatus?
Group of membranous sac stacked together
What are the functions of the Golgi?
- Modification of proteins made in RER
- Sending proteins to destinations
- Synthesis of macromolecules
Based on the modification of proteins made in RER, what is the Golgi especially important for?
Modification of oligosaccharidse
The vesicle traffic too and from the Golgi are…?
Unidirectional
What is retrograde traffic based on the Golgi traffic?
Proteins hat reside in the ER may accidentally escape and must be brought back to the ER from the Golgi
Based on Golgi, the portion closest to the ER are called….and the portion further from the ER are called…?
cis stack, trans stack
What is the medial stack based on Golgi?
The middle stack
What happens to the proteins in the vesicle once they reach the Golgi?
Fuse with the cis stack
What occurs after the protein vesicle fused with the cis stack of the Golgi?
Modified and transferred to the medial stack, further modified and pass to the trans stack
How does the proteins leave the Golgi?
At the trans face in transport vesicles
What happens if the vesicle contains proteins anchored to its membrane?
These proteins will remain attached to the cel as cell-surface proteins
What is the constitutive secretory pathway based on Golgi?
Vesicles from the Golgi immediately to the cell surface
What is the regulated secretory pathway?
Specialized secretary cells store secretory proteins in secretory vesicles and release them at certain times
What is the lysosome responsible for?
Degradation biological macromolecules by hydrolysis
Does lysosome have a membrane?
Yes
Where are the lysosome proteins made?
In the RER
What is autophagy and which organelle processes it?
Self-eating and lysosome
What is phagocytosis and which organelle processes it?
Cell eating and lysosome
What is the purpose of macrophage?
Apart of the immune system, engulfing bacteria and viruses
Where do bacteria and viruses end up to be degraded?
End up in a phagocytic vesicle that will fuse with a lysosome