BIO Class 1 Flashcards
What are polymers?
Macromolecules made from monomers
What is polymerization?
Reactions between these macromolecules
What is condensation?
Bind a molecule with water
What is hydrolysis?
Split a molecule with water
What is the monomer for proteins?
Amino acids
What is the structure of an amino acid?
Amine, side chain and carboxylic acid
What are the classifications of amino acids?
Polar, non polar, acidic, basic and neutral
What binds amino acids together?
Peptide bond
What is the direction of the synthesis of the amino acids?
N -> C synthesis
What is the primary structure of protein?
Amino acid sequence
What is the secondary structure of protein?
Hydrogen bonding between backbone atoms
What are the two types of secondary structure?
Alpha-helix and beta-pleated sheets
What is tertiary structure?
Folding due to side chain interactions with a polypeptide
What are the two main types of tertiary structure interactions?
Non-covalent and covalent
What are the three types of non-covalent bonding between protein structure?
- non polar / nonpolar
- polar neutral / polar neutral
- acid / base (electrostatic)
What are the covalent bondings between protein structures?
Disulfide bridges
What is quaternary structure?
Side chain interactions between different polypeptides
What is the monomer of carbohydrates?
Monosaccharides
What is the equation for monosaccharides?
CnH2nOn
1:2:1 ratio
What are the three common monosaccharides?
- Glucose
- Fructose
- Galactose
What is the similarity between glucose, fructose and galactose?
They all have the same formula, C6H12O6
What are the 5 carbon sugars?
Ribose and deoxyribose
What are the 3 common disaccharides?
- Maltose
- Sucrose
- Lactose
What is maltose monosaccharides?
Glucose and glucose
What is sucrose monosaccharides?
Glucose and fructose
What is lactose monosaccharides?
glucose and Galactose
What is the formula of maltose and why?
C12H22O11 because of dehydration synthesis
What is the animal glucose storage molecule?
Glycogen
What is the plant glucose storage molecule?
Starch
What is cellulose?
Plant structure
What are the three common polysaccharides?
- Glycogen
- Starch
- Cellulose
What is the main function of polysaccharides?
Energy
What are the main use of carbohydrates?
Energy and cell surface markers
What do unicellular can use carbs as?
Adhesion molecules
What is the monomer of lipids?
Hydrocarbons
What is saturated fatty acid?
No double bonds; solid
What is unsaturated fatty acid?
Kink in the chain; double bond
What is unsaturated at room temperature?
Liquid
What is the structure of trans fat?
Have substituent on opposite sides of the double bond
What is the problem with trans fat?
They can stack up on one another
What is the most common way to find a fat?
Triglyceride
What is the function of triglyceride?
Store energy
What is the process of finding fatty acids in the body?
Esterification
What is the phospholipid determined to be based on its properties?
Amphipathic; both polar and non polar
What is terpene built from?
Isoprene units
What is the propertiy of isoprene?
Hydrophobic
What is the common function of squalene?
Waxes
What is squalene?
6 isoprene together
What is squalene a precursor to?
Ring lipids
What is an example of a ring lipid?
Cholesterol
What is the structure of steroid?
Cholesterol and derivatives (3 six carbon rings + 1 five carbon ring)
What must be recognized for it to be cholesterol?
Ring structures
What is the function of cholesterol?
Cell membrane, precursor to steroid hormones and bile salts
What is the equation of thermodynamics?
∆G = ∆H - T∆S
What are the variables in ∆G = ∆H - T∆S mean?
∆G: Gibbs free energy
∆H: Enthalpy
∆S: Kinetic energy
What does it mean if ∆G is less than 0?
Spontaneous reaction
What does it mean if ∆G is more than 0?
Nonspontaneous reaction
What does it mean if ∆G is equal to 0?
Equilibrium
What is exergonic reaction?
Energy released, ∆G is negative
What is endergonic reaction?
Energy added, ∆G is positive
What is the properties of transition state?
High energy and transient
What is the reaction coordinate term?
x-axis in energy graph to show where you are in the reaction based one energy
What do catalyst do?
Stabilize the transition state and reduce activation energy
What are the 2 defining characteristics of enzymes?
- Increase rate of reaction
- Not be used up in reaction
- Specificity
What is a major way of regulating enzymatic activity?
Phosphorylation
What is a common way of regulating enzymatic activating involving another molecule?
Allosteric regulation
What is a negative feedback loop?
The last element inhibits the first element
What is a positive feedback loop?
Last element activates the first element
What must positive feedback loop have?
Must have external regulator
What is Vmax?
Rate of product formation at which the enzyme can catalyze
What is Vmax dependent on?
- Enzyme concentration
2. Specific enzyme you are using
What is Km in the V vs [S} graph?
[S} require dot reach half of Vmax like an affinity the E has for S
The more affinity to the enzyme, how does that affect Km?
Km decreases
What is a competitive inhibitor?
Bind to the active site
How does active site effect Vmax and Km?
Vmax stays the same; Km increases
What is non-competitive inhibition?
Allosteric regulation, turning enzyme off
How does non-competitive effect Vmax and Km?
Vmax is lower, Km is unchanged
What is uncompetitive inhibition?
Increases affinity to substrate but substrate stuck on enzyme
Where does noncompetitive inhibition bind?
At allosteric site of enzyme along, does not change shape of active site
Where does uncompetitive inhibition bind?
Binds allosteric site of ES complex
What is the effect of uncompetitive inhibition on Vmax and Km?
Vmax decreased and Km decreased
Where does a mixed inhibitor bind?
Binds to allosteric site alone and change active site or bind to ES complex
What is the lineweaver-burk plot?
Inverse plot of 1/[V] and 1/[S}
What happens when you move towards the origin on the inverse plot?
The denominator gets bigger
What does the y-intercept represent in a LWB graph?
1/Vmax
What does the x-intercept represent in a LWB graph?
-1/Km
For a competitive inhibitor, what happens to the -1/m on inverse plot?
-1/km moves towards the right to be closer to the origin since it increases
For a noncompetitive inhibitor, what happens to the 1/Vmax?
Decreases
For a noncompetitive inhibitor, what happens to the 1/Vmax on inverse plot?
Would move upwards to get away from the origin since it decreases
For a noncompetitive inhibitor, what happens to the -1/Km?
stays the same
For a competitive inhibitor, what happens to the 1/Vmax on inverse plot?
Stays the same
For a uncompetitive inhibitor, what happens to the 1/Vmax in the LWB plot?
Shift up to get away from the origin
For a uncompetitive inhibitor, what happens to the -1/Km in the inverse plot?
shift to the left to get away from the origin
Which reactions based on LWB plot are parallel?
- Uncompetitive and uninhibited
2. Noncomp and competitive