Exam 1: Bacterial Classification and Morphology Flashcards
What are eukaryotic organisms?
True nucleus
Includes all organisms, microscopic and macroscopic, except bacteria and blue green algae
What are prokaryotic organisms?
Before nucleus
Simpler cell types, 0.3 to 2.0 μm in diameter
Describe the difference between prokaryotic and eukaryotic cells for nuclear membrane
Prokaryotic cells: Absent
Eukaryotic cells: Present
Describe the difference between prokaryotic and eukaryotic cells for nucleolus
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for chromosome number
Prokaryotic: 1 usually
Eukaryotic: More than 1
Describe the difference between prokaryotic and eukaryotic cells for chromosomal structure
Prokaryotic: Supercoiling, no histones
Eukaryotic: Histones
Describe the difference between prokaryotic and eukaryotic cells for ploidy
Prokaryotic: Haploid
Eukaryotic: Diploid
Describe the difference between prokaryotic and eukaryotic cells for reproduction
Prokaryotic: Asexual
Eukaryotic: Sexual and asexual
Describe the difference between prokaryotic and eukaryotic cells for mitotic nuclear division
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for cell wall with nurein
Prokayotic: Present
Eukaryotic: Absent
Describe the difference between prokaryotic and eukaryotic cells for cytoplasmic ribosomes
Prokaryotic: 70S
Eukaryotic: 80S
Describe the difference between prokaryotic and eukaryotic cells for cytoskeleton
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for microtubules
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for endoplasmic reticulum
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for lysosomes
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for mitochondria
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for chloroplasts
Prokaryotic: Absent
Eukaryotic: Present (plant cells)
Describe the difference between prokaryotic and eukaryotic cells for golgi apparatus
Prokaryotic: Absent
Eukaryotic: Present
Describe the difference between prokaryotic and eukaryotic cells for electron transport
Prokaryotic: cytoplasmic membrane
Eukaryotic: mitochondrial membrane
Describe the difference between prokaryotic and eukaryotic cells for cytoplasmic membrane
Prokaryotic: Sterols generally absent
Eukaryotic: Sterols present
Why are the differences between prokaryotes and eukaryotes important?
The differences reveal their different strategies for survival
The differences allow antimicrobials targeting unique bacterial structures
What is the strategy of survival for eukaryotes?
Adaptation and specialization
What is the strategy of survival for prokaryotes?
Divide and conquer
How are fungi like bacteria?
Their structural complexity does not include differentiation into specialized tissues and organs
What is the system by which bacteria are named?
Bacterial nomenclature
How is the classical binomial Linnean system used?
Each distinct kind is given a species and genus name
A number of species ma be included in a genus
The first word is the genus name and is always capitalized
Both the genus and species names are italicized
What is taxonomy?
System of classification that groups bacteria with similar properties and is used to distinguish those that are different
What is the basic taxonomic unit in bacteria?
Species
What is a species defined as in prokaryotes?
A group of strains with unique phenotypic properties and exhibit more than 70% whole genome DNA-DNA hybridization among strains
What does a bacterial strain consist of?
The descendants from a single isolate in pure culture
What is a type strain?
The originally described isolate of the species
What is the modern system of classification that is now used?
Polyphasic taxonomy
What does polyphasic taxonomy use?
The combines systems of DNA sequence and phenotypic characteristics
What are the different methods of DNA sequence?
DNA-DNA hybridization (70%)
16S rRNA sequence (97%)
Multilocus sequence typing
Average nucleotide identity (95%)
What are the phenotypic characteristics looked at for polyphasic taxonomy?
Chemical analyses of structural components Serologic reactivity Enzyme profile Nutritional requirements Morphology
What are the accepted phylogenetic classifications of bacteria?
Bergey’s Manual of Systematic Bacteriology
The National Center for Biotechnology Information
What are keys used to do?
Classify bacteria into convenient groups of clinical interest
What are the 3 domains in the tree of life?
Archaebacteria
Eubacteria
Eukaryota
How can eubacteria be divided?
Cell envelope type
Cell morphology
What are the cell envelope types?
Gram-positive
Gram-negative
What are the 3 basic cell types?
Cocci (spherical)
Bacilli (cylindrical/rods)
Spirilla (helical, spiral, or curved)
What allows bacteria to be motile?
Flagella
Corkscrew
Gliding
What are the methods of multiplication?
Binary fission
Budding
What is binary fission?
Once cell splits into 2 of slightly smaller size, no mitosis or meiosis
What are the types of cell association?
Long chains
Clusters
Cubical packets of 4 or 8
Pairs
What bacteria are in long chains?
Streptococci
What bacteria are in clusters?
Staphylococci
What is the dependence on living cells for growth?
Some are capable of independent growth on lifeless artificial media
Some require living cells from growth, especially obligate intracellular parasites
What are the different atmospheric requirements?
Obligate aerobes Obligate anaerobes Facultative anaerobes Microaerophilic Aerotolerant Capnophilic
What are obligate aerobes?
Require oxygen, oxidize only, respire
What are obligate anaerobes?
Killed by oxygen, ferment only or use anaerobic respiration
What are facultative anaerobes?
Go either way, oxidize or ferment, prefers growing with oxygen
What are microaerophilic?
Require reduced oxygen
What are aerotolerant?
Do not require oxygen, not killed by oxygen, ferment only
What are capnophilic?
Require increased carbon dioxide
What are the most common units of measurement in microscopy?
The micron/micrometer (10-6) and the nanometer (10-9)
What is the maximum resolving power of a light microscope?
0.2 μm under optimal conditions
What magnification is commonly used with oil immersion lens?
1000x
What is darkfield and phase contrast microscopy?
Resolution to 0.1 μm
Used to observe unstained, living cells and movement
What is fluorescent microscopy?
Resolution to 0.1 μm
Used in research and diagnostic labs; immunofluorescence
What is electron/scanning and transmission microscopy?
Resolution to 0.0003 μm (0.3 nm)
Internal or surface detail observable
How can you observe transparent cells?
Staining procedures
What is the preparation for staining?
A drop of liquid containing bacteria is placed on a glass slide and allowed to dry
The dried film is “fixed” onto the slide using a chemical fixative or heat
Stains are used that preferentially stain specific cell components
What does passing the slide through a flame do?
Coagulates the cell surface protein and sticks the bacteria to the slide
What are the different types of stains?
Positive
Negative
Differential
Describe positive stains
Have an affinity for one or more cell components
The simplest stains are colored cationic salts that combine with phosphate groups of nucleic acids
What is an examples of a positive stain?
Methylene blue
What are negative stains?
Acidic dyes that do not penetrate cells
The background contrasts with cells
What is an example of negative stains?
India ink
What are differential stains used to do?
Separate bacteria into groups based on their ability to take up and retain certain dyes
What are examples of differential stains?
Gram stain and acid fast stain
What is the gram stain?
The most widely used differential stain to divide all eubacteria into 2 groups
What is the procedure for gram stain?
Primary stain
Mordant
Decolorizer
Counterstain
Describe the primary stain step of gram stain
Gentian or crystal violet is a basic purple dye used
All bacteria able to take it up are stained purple
It is applied for 45-60 seconds and gently rinsed off with tap water
Describe the mordant step of gram stain
Gram’s iodine is added to the slide and incubated for 45-60 second
It complexes with crystal violet and decreases solubility
Rinse gently
Describe the decolorizer step of gram stain
Ethyl alochol +/- 10% acetone is dripped over the smear in a controlled fashion for 5-7 seconds
Rinse gently to stop decolorization
This is the most important step
Describe the counterstain step of gram stain
Safranin is contrasting red dye that is applied for 45-60 seconds
Rinse gnetly
How can you tell if a bacteria is gram positive?
It will retain the purple dye and resist decolorization
How can you tell if a bacteria is gram negative?
Bacteria that were decolorized will take up the counterstain and appear pink or red
What is gram’ stain used to determine?
Gram’s reaction
Arrangement (spatial orientation resulting as a consequence of growth)
Morphology (form of cells)
What is a simple test for determining gram reaction of bacteria without staining?
Add a colony to a drop of 10% KOH on a glass slide and stir
If solution becomes soapy, bacteria are gram-negative
The reaction is caused by saponification of phospholipids in the outer membrane
Look at pictures in PowerPoint
Look at pictures in PowerPoint