1S [LEC]: Enzymes (intro + CK + LDH) Flashcards
Biological molecules that act as catalysts, facilitating and accelerating chemical reactions within living organisms
Enzymes
Specific proteins that catalyze biochemical reaction without altering the equilibrium point of the reaction or being consumed or changed in composition
Enzymes
Refers to the number, type, and sequence of amino acids in the polypeptide chain
Primary structure
Refers to the commonly formed arrangements stabilized by hydrogen bonds between nearby amino acids within the protein molecule
Secondary structure
Refers to the overall shape of the protein molecule
Tertiary structure
The structure that results from the interaction of more than one protein molecule, or protein subunits
Quaternary structure
The substance acted upon by the enzyme
Substrate
A water free cavity, where the substrate interacts with particular charged amino acid residues
Active site
A cavity other than the active site
Allosteric site
Binds the regulator molecules
Allosteric site
T/F: Regulator molecules change enzyme conformation
True
Enzymes with the same function but exist in different forms
Isoenzyme
Forms of enzymes that were post-transcriptionally modified
Isoforms
Non-protein molecule necessary for enzyme activity such as activators and coenzymes
Cofactors
A coenzyme bound tightly to the enzyme
Prosthetic group
The enzyme portion that is activated by the prosthetic group
Apoenzyme
Prosthetic group + apoenzyme
Holoenzyme
Inactive precursor of an enzyme
Zymogen/ Proenzyme
Classify the enzyme:
Catalyze an oxidation-reduction reaction between two substrated
Oxidoreductase
Classify the enzyme:
Catalyze the transfer of a group other than hydrogen from one substrate to another
Transferase
Classify the enzyme:
Catalyze hydrolysis of various chemical bonds
Hydrolase
Classify the enzyme:
Catalyze removal of groups from substrates without hydrolysis
Lyases
Classify the enzyme:
Catalyze the interconversion of geometric, optical, or positional isomers
Isomerase
Classify the enzyme:
Catalyze the joining of two substrate molecules
Ligase
Classify the enzyme:
Lactate dehydrogenase
Oxidoreductase
Classify the enzyme:
Glucose-6-phosphate dehydrogenase
Oxidoreductase
Classify the enzyme:
Glutamate dehydrogenase
Oxidoreductase
Classify the enzyme:
Creatine kinase
Transferase
Classify the enzyme:
Alkaline phosphatase
Hydrolase
Classify the enzyme:
Acid phosphattase
Hydrolase
Classify the enzyme:
a-Amylase
Hydrolase
Classify the enzyme:
Cholinesterase
Hydrolase
Classify the enzyme:
Chymotrypsin
Hydrolase
Classify the enzyme:
Elastase-1
Hydrolase
Classify the enzyme:
5’ nucleotidase
Hydrolase
Classify the enzyme:
Aldolase
Lyase
Classify the enzyme:
Triosephosphate isomerase
Isomerase
Classify the enzyme:
Glutathione synthetase
Ligase
If the reaction is substrate dependent, it is ___-order kinetics
first
If the reaction is enzyme dependent, it is ___-order kinetics
zero
If the reaction is substrate independent, it is ___-order kinetics
zero
If the reaction is enzyme independent, it is ___-order kinetics
first
Curve of velocity versus substrate concentration for enzymatic reaction
Michaelis-Menten curve
Curve that is a transformation of Michaelis-Menten curve
Lineweaver Burk
A compound that shares some structural feature found in the substrate will typically physically bind to the same form of the enzyme that the substrate binds
Competitive inhibitory
Inhibitors associated with enzymes showing allosteric inhibition
Noncompetitive inhibitor
Identify the type of inhibition based on Lineweaver Burk curve change:
Same Vmax
Increased Km
Competitive
Identify the type of inhibition based on Lineweaver Burk curve change:
Vmax not achieved & decreased
Same Km
Noncompetitive
Identify the type of inhibition based on Lineweaver Burk curve change:
Vmax not achieved
Decreased Km
Uncompetitive
Size of CK
82 000 Daltons
CK isoenzyme:
Most cathodal
CK-MM
CK isoenzyme:
Least anodal
CK-MM
CK isoenzyme:
Most anodal
CK-BB
CK isoenzyme:
Least cathodal
CK-BB
CK isoenzyme:
Most numerous
CK-MM
CK isoenzyme:
Bound to the exterior surface of the inner mitochondrial membranes of muscle, brain, and liber
Mitochondrial CK
CK isoenzyme:
Migrate cathodal to CK-MM
Mitochondrial CK
Macro-CK migrate midway ___ and ___
CK-MM
CK-MB
Method of isoenzyme measurement:
May visualize adenylase kinase
Electrophoresis
Adenylase kinase is cathodal to ___
CK-MM
Method of isoenzyme measurement:
Reference method
Electrophoresis
Method of isoenzyme measurement:
More sensitive and precise if done properly
Ion exchange chromatography
Method of isoenzyme measurement:
Measure enzyme concentration rather than activity
Immunoassays
Method of isoenzyme measurement:
Double Ab immunoinhibition
Immunoassay
Immunoassays measure Abs against which subunits?
M and B
Forward CK method with an optimum pH of 9
Tanzer Gilvarg
Reverse CK method that is 2-6x faster and has an optimum pH of 6.8
Oliver Rosalki
Analyte that is markedly increased in RBC disorder
LDH
Catalyzes the interconversion of lactic and pyruvic acids by transferring hydrogen using the coenzyme NAD+
LDH
LD forward method
Wacker method
LD reverse method that is 3x faster
Wroklewski La Due method
A phenomenon where LD 1 has a higher amount than LD 2
Flipped pattern
Flipped pattern is most commonly observed in what condition?
Heart (AMI) & RBC disease
LD isoenzyme that is cathodal to LD5 and is a hallmark of arteriosclerotic CVD
Alcohol dehydrogenase (LD6)
Macro-LD is found between ___ and ___
L3
L4
Classify the enzyme:
Glycogen phosphorylase
Transferase
Classify the enzyme:
Pyruvate kinase
Transferase
Classify the enzyme:
Trypsin
Hydrolase
The intermediate state formed after the reactants exist
Transition state
The excess energy needed to induce the transition state
Activation energy
Specificity where the enzyme combines only one substrate and catalyzes only the one corresponding reaction
Absolute specificity
Specificity where the enzyme combine with all substrates containing a particular functional group, such as a phosphate ester
Group specificity
Specificity where the enzyme predominantly combine with only one optical isomer of a certain compound
Stereoisomeric specificity
Hypothesized the role of substrate concentration in formation of the enzyme-substrate complex
Michaelis and Maud Menten
A constant for a specific enzyme and substrate under defined reaction conditions an can provide an expression of the relationship between the velocity of an enzymatic reaction and substrate concentration
Michaelis-Menten constant
The ___ is specifically the substrate concentration at which the enzyme yield half the possible maximum velocity
Michaelis-Menten constant (Km)
A temperature increase of ___ will approximately double the enzymatic reaction
10C
The rate of denaturation increases as the temperature increase s and usually is significant at what range of temperature?
40-50C (but some may denature at body temp, 37C)
T/F: Low temperatures render enzymes irreversibly inactive
False (reversibly inactive)
Serve as secondary substrate for enzymatic reactions
Coenzymes
The method of enzyme determination where the reactants are combined, the reaction proceeds for a designated time, the reaction is stopped, and a measurement is made of the amount of reaction that has occurred
Fixed-time method
The method of enzyme determination where multiple measurements, usually of absorbance change, are made during the reaction, at specific time intervals
Continuous monitoring/ Kinetic assays
T/F: Kinetic methods are more advantageous than fixed-time methods
True
Conventional unit for enzymatic activity
IU (International Unit)
SI unit for enzymatic activity
Katal
Conversion factor from IU to nano katal
1 IU = 17 nano katal
Increased CK isoenzyme in Duchenne Muscular Dystrophy
CK-MM
Predominant CK isoenzyme in the heart
CK-MM
CK isoenzyme that is an indicator of severe illness, malignant tumor, and cardiac abnormalities
Mitochrondrial CK
The Macro CK is comprised of which CK isoenzyme?
CK-MM
The Macro CK is complexed with immunoglobulins, namely ___
IgG and IgA
In CK forward method, the enzyme is measured through the ___ in absorbance
Decrease (since the reaction will be NADH»_space;> NAD)
In CK reverse method, the enzyme is measured through the ___ in absorbance
Increase (since the reaction will be NAD»_space;> NADH)
Effect of hemolysis in CK measurement
False increase
Reference range for total CK
Male: 46-171 U/L
Female: 34-145 U/L
Reference range for CK-MB
<5% total CK
LD isoenzyme increased in RBC disorders
LD1, LD2
LD isoenzyme increased in lung, spleen, and pancreatic problems
LD3
LD isoenzyme increased in liver and skeletal muscle conditions
LD4, LD5
In LD forward method, the enzyme is measured through the ___ in absorbance
Decrease (NADH»_space;> NAD rxn.)
In LD reverse method, the enzyme is measured through the ___ in absorbance
Increase (NAD»_space;> NADH)