(P) Lec 3.2: Bacterial Pathogenesis and Epidemiology, Antimicrobials and Mechanism of Bacterial Resistance, and Indigenous Microbial Flora Flashcards
Chapter 13 of Mahon's
Performed on bacteria and fungi isolated from clinical specimens to determine which antimicrobial agents might be effective in treating infections caused by these organisms
Antimicrobial Susceptibility Testing
Only organisms that are likely to be contributing to an infection should be tested
Antimicrobial Susceptibility Testing
Often performed by a disk diffusion or dilution (minimal inhibitory concentration [MIC]) method
Antimicrobial Susceptibility Testing
Inoculum concentration of bacteria to be tested must be ______
Standardized
____ results may occur if too few bacteria are tested
False-susceptible
____ results may be the outcome of testing too many bacteria
False-resistant
Name the standard
Standard Suspension
McFarland 0.5 standard: contains 99.5 mL of 1% sulfuric acid and 0.5 mL of 1.175% barium chloride.
Name the standard
Bacterial Inoculum Size
1.5 × 10^8 CFU/mL
Name the standard
Standard Medium
Mueller-Hinton Heated Agar
Name that standard
Standard Depth
4-6 mm
Name that standard
Standard pH
7.2-7.4
Name that standard
Atmosphere requirement
Aerobic, no CO2
Name that standard
Temperature
35 - 37°C
Disk Diffusion
1.5 x 10^8 CFU/mL
Broth Dilution
5 x 10^5 CFU/mL
Agar Dilution
1 x 10^4 CFU/mL
Composition of Mueller Hinton Agar
- Beef infusion solids
- Starch
- Casein hydrolysate agar
What are the storage guidelines of Mueller Hinton Agar?
- Store prepared media below 8°C
- Protect from direct light
- Store the dehydrated powder in a dry place and tightly sealed containers at 2 - 25°C
Main Purpose of 0.5 McFarland Standard
To adjust the turbidity of bacterial suspensions to a standardized level
Most common composition of 0.5 McFarland Standard
- 99.5 mL of 1% sulfuric acid
- 0.5 mL of 1.175% barium chloride
Can be prepared by adding specific volume of 1% sulfuric acid and 1.175% barium chloride to obtain a barium sulfate solution with a specific optical density
Storage of 0.5 McFarland Standard
Stored in an upright position at 4°C to 25°C and protected from light
Under the proper storage conditions, how long does the 0.5 McFarland Standard last?
12 weeks from date of manufacture
Used to determine the minimum inhibitory concentration (MIC) or the lowest concentration of antimicrobial agent required to inhibit the growth of the bacterium
Dilution Susceptibility Testing
Those that are attainable in vivo following standard dosing of the respective antimicrobial agent
Serial Two Fold-Dilution Concentrations
Once the MIC has been determined, the organism is interpreted as ____, ____, ____ or ____ to each agent
Nonsusceptible, susceptible, intermediate, or resistant
They described a test that measured the effectiveness with which penicillin in serum killed bacteria associated with endocarditis
Schlichter and MacLean
What year did Schlichter and MacLean describe the Serum Bactericidal Test?
1940s
Analogous to the MIC-MBC test except that the medium used is patient’s serum
Serum Bactericidal Test
Results relate to the amount of antimicrobial agent and any other antibacterial factors (e.g., antibody, opsonins, complement) present in the patient’s serum)
Serum Bactericidal Test
Also known as oxacillin resistance screening agar
Oxacillin Agar Screen
A specialized medium used for the screening of oxacillin-resistant microorganisms, primarily focusing on detecting MRSA
Oxacillin Agar Screen
What are the steps involving oxacillin agar screen?
- Allow medium to reach room temperature.
- Take the specimen swab and roll it near the edge of the plate.
- Then, use a sterile loop to perform a four-quadrant streak starting from that area to get isolated colonies.
- Incubate aerobically at 35°C.
- Examine after 24 hours for typical MRSA colonies. Re-incubate plates an additional 24 hours before discarding.
Used to detect VRSA and Enterococci resistant to VAN
Vancomycin Agar Screen
What are the steps involving vancomycin agar screen?
- Dip the swab into the inoculum (comparable to 0.5 McFarland std) to the plate medium (BHI w 6 mg/L of vancomycin) by streaking over the entire agar surface.
- Inc. 24 hrs
Resistant to VAN if:
They had developed mutations in their cell walls
Susceptible to VAN if:
They acquired a plasmid containing vanA vancomycin resistance gene from vancomycin-resistant enterococci
Used to detect inducible clindamycin resistance in bacteria, particularly in coagulasenegative staphylococci (CoNS) and Staphylococcus aureus
D-Test
The two antibiotics being observed in D-Test are ____ and ____
Erythromycin and clindamycin
Synergy Testing
Its antibacterial activity is significantly greater than that of a single agent
Synergism
Synergy Testing
The activity of the combination less than (and MICs are greater than) that of the single agents
Antagonism
Synergy Testing
The activity of the combination is equal to that of the single agents
Indifference
A method used to study the antimicrobial activity of a compound over time. This assay helps determine the bactericidal or bacteriostatic properties of an antimicrobial agent against a particular microorganism
Time-Kill Assay
What are the steps involving Time-Kill Assay?
- Prepare bacterial inoculum
- Add antimicrobial agent
- Incubate (on time intervals)
- Serially diluted, and then plated onto suitable agar
- Read the number of colonies
What are the steps involving E-Test?
- Prepare bacterial inoculum
- Uniformly spread bacteria on MHA
- Impregnate E-test strip
- Incubate
- Read
A quantitative method used to determine the MIC of antimicrobial agents against specific microorganisms
E-Test
It is produced by microorganisms i.e. bacteria and fungi, that it sends outside its cell to harm or kill another microorganism
Antibiotics
A drug used to treat infections caused by bacteria and other microorganism
Antibiotics
Name the antibiotic
Bacillus subtilis
Bacitracin
Name the antibiotic
Bacillus polymyxa
Polymyxin
Name the antibiotic
Streptomyces nodosus
Amphotercin B
Name the antibiotic
Streptomyces venezuelae
Chloramphenicol
Name the antibiotic
Streptomyces erythraeus
Erythromycin
Name the antibiotic
Streptomyces griseus
Streptomycin
Name the antibiotic
Micromonospora purpurea
Gentamicin
Name the antibiotic
Cephalosporium spp. (fungi)
Cephalothin
Name the antibiotic
Penicillium notatum (fungi)
Penicillin
Inhibitors of Cell Wall Synthesis
Antibiotic: B-lactams
Give the examples, principles, and any additional notes.
Examples: Penincillins, Cephalosporins, Carbapenams (Imipenem), Monobactams (Azotreonam)
Principle: Targets the enzyme mediating the transpeptidation
Additional Notes: Methicillin for penincillin-resistant Staph.
Inhibitors of Cell Wall Synthesis
Antibiotic: Glycopeptides
Give the examples, principles, and any additional notes.
Example: Vancomycin
Principle: Binds into the substrate of the transpeptidation enzyme
Additional Notes: DOC for Clostridium difficile and for MRSA
Inhibitors of Protein Synthesis
Antibiotic: Aminoglycosides
Give examples and principles.
Examples: Gentamicin, Tobramycin, Kanamycin
Principle: Acts on 30S subunit; not active against anaerobes, used with a penicillin for Enterococcus
Inhibitors of Protein Synthesis
Antibiotic: Tetracyclines
Give examples and principles.
Examples: Tetracycline, Doxycycline
Principle: Reversible binding to 30S subunit
Contraindication: tetracyclin affects bone and teeth in infants
Inhibitors of Protein Syntheis
Antibiotic: Phenicols
Give examples and principles.
Examples: Chloramphenicol
Principle: Acts on 50S subunit
Inhibitors of Protein Synthesis
Antibiotic: Macrolides
Give examples and principles.
Examples: Erythromycin, Azithromycin, Clindamycin
Principles: Acts on 50S subunit; clindamycin for gram (+) and gram (-) anaerobes
Inhibitors of DNA
Antibiotic: Quinolones
Give the examples.
- Ciprofloxacin
- Norfloxacin
For P. aeruginosa and other anaerobes
Give the resistance and disease.
Agent: S. pneumoniae
Resistance: Penicillin
Disease: Pneumonia
Give the resistance and disease.
Agent: Shigella
Resistance: Multiple Resistance
Disease: Dysentery
Give the resistance and disease.
Agent: Salmonella typhi
Resistance: Multiple Resistance
Disease: Typhoid
Give the resistance and disease.
Agent: Neisseria gonorrhoeae
Resistance: Penicillin and Tetracycline
Disease: Gonorrhea
Give the resistance and disease.
Agent: Mycobacterium tuberculosis
Resistance: Multiple Resistance
Disease: Tuberculosis
Give the resistance and disease.
Agent: S. aureus
Resistance: Methicillin and Cancomycin
Disease: Skin and soft tissue infections
Give the resistance and disease.
Agent: Klebsiella, Pseudomonas
Resistance: Multiple Resistance
Disease: Pneumonia, UTI
- Presence of genes responsible for resistance to its own antibiotic
- Lack transport system or target for that antibiotic
- Due to increase efflux activity
Natural Antimicrobial Resistance
- Gene changes or exchanges that result from acquired resistance are usually caused by genetic mutation(s)
- Acquisition of genes from other organisms via gene transfer mechanisms, or a combination of mutational and gene transfer events
Acquired Antimicrobial Resistance
Acquired Antimicrobial Resistance
Process by which bacteria take up free, extracellular DNA from their environment and incorporate it into their own genome
Transformation
Acquired Antimicrobial Resistance
A process of horizontal gene transfer where genetic material is transferred directly from one bacterial cell to another through a physical connection known as a pilus or conjugation bridge
Conjugation
Acquired Antimicrobial Resistance
Process by which bacterial DNA is transferred from one bacterium to another by a bacteriophage (a virus that infects bacteria)
Transduction
Specific Antimicrobial Resistance
Aminoglycosides
Inactivation of Drugs by Enzymes
- Acetyltransferases
- Phosphotransferases
- Adenylyltransferase
Specific Antimicrobial Resistance
Chloramphenicol
Inactivation of Drugs by Enzymes
- Chloramphenicol
- Acetyltransferases
Specific Antimicrobial Resistance
Macrolide
Inactivation of Drugs by Enzymes
- Esterases
- Methyltransferases
- Hydrolytic enzymes
Specific Antimicrobial Resistance
Tetracycline, B-lactams, aminoglycosides, quinolone
Alteration of Membrane Permeability
Changes in porins, efflux pumps, altered membrane composition, biofilm formation, membrane lipid modifications
Specific Antimicrobial Resistance
Macrolide
Alteration of Intracellular Target Site
- Methylation of 23S rRNA
- Blocking erythromycin binding site
Specific Antimicrobial Resistance
Aminoglycosides
Alteration of Intracellular Target Site
- Altered protein in 30S ribosome
Specific Antimicrobial Resistance
B-lactams
Alteration of Intracellular Target Site
- Alteration in penicillin binding proteins
Specific Antimicrobial Resistance
Rifampin
Alteration of Intracellular Target Site
- Altered DNA-dependent RNA polymerase
Specific Antimicrobial Resistance
Quinolones
Alteration of Intracellular Target Site
- Modified DNA gyrase
- Topoisomerase IV
Specific Antimicrobial Resistance
Sulfonamides
Overproduction of Target Enzyme
- Increased levels of Dihydropteroate synthase
Specific Antimicrobial Resistance
Trimethoprim
Overproduction of Target Enzymes
- Increased levels of Dihydrofolate reductase (DHFR)