Basic Biochem Flashcards

1
Q

Proton (+)

A

define the atomic number and element

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2
Q

Electron (-)

A

interact in bonds. occupy space >100,000 times the width of atomic nucleus

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3
Q

Neutron (no charge)

A

help form nucleus, contribute to atomic mass and isotopes

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4
Q

Atom

A

the basic unit of matter

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5
Q

Atoms come in what?

A

elements, each element is defined by the number of protons in the nucleus (atomic number)

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6
Q

Electrons occupy?

A

orbitals: 3D spaces around the nucleus where they can interact with neighboring atoms

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7
Q

Electrons define

A

a fixed number of electrons can fit in a given energy level around the nucleus. each energy level is subdivided into orbital clouds of particular shape

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8
Q

Energy levels

A
  • electrons have potential energy related to their position
  • electrons farther from the atomic nucleus have more energy
  • the chemistry of life capitalizes on this property to capture and use chemical energy
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9
Q

Elements of life

A

carbon, hydrogen, oxygen, nitrogen, and Potassium

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10
Q

C,H,O,N,P

A

represent more than 95% of the matter in all life

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11
Q

Carbon

A

the backbone of of biomolecules

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12
Q

Hydrogen

A

most abundent in number

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13
Q

Life

A

based on smaller atoms that are common in the universe, due to the way atoms are naturally made

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14
Q

Isotopes

A

version of an element where the number of neutrons varies. Isotopes have same chemical behavior but are often rare
ex: hydrogen-1 (protium), hydrogen-2 (deuterium), and hydrogen-3 (tritium),

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15
Q

Mass Spectrometers

A

special tool that can detect isotopes, separates and measures atoms by mass and quantity

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16
Q

Radioisotopes

A

emit radiation energy detected by spectroscope

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17
Q

Radioactive Decay

A

some isotopes decay into daughter elements at fix rates

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18
Q

Isotope fingerprint

A

stable isotope ratios can vary in samples often by natural region

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19
Q

Covalent bond

A

sharing of electrons to achieve full valence orbits between bonded atoms

20
Q

Ionic bond

A

transfer of electrons

21
Q

Ions

A
  • charged atoms of molecules
  • occurs when an atom or moles gains or loses electrons to gain stability in electron orbitals
  • most common among atoms near noble gases
    ex: sodium ion (Na+), chloride ion (Cl-), and calcium ion (Ca2+).
22
Q

Anions

A

negative ions

23
Q

Cations

A

positive ions

24
Q

Opposite charges

A

attract to form ionic bonds

25
Q

Atom bond

A

a single atom can form multiple covalent bonds

26
Q

Four Valence Electrons

A

available to form up to four stable bonds that are equidistant from one another

27
Q

Polyatomic Ions

A

some covalently bonded molecules can also become ions to form more stable structures

28
Q

Polar Covalent Bond

A

bonding electrons shared unequally between two atoms, partial changes in atoms

29
Q

Nonpolar Covalent Bond

A

bonding electrons shared equally between two atoms, no charge on atoms

30
Q

Cohesion

A

polar attraction between molecules of the same kind, forms hydrogen bonds

31
Q

Adhesion

A

polar attraction between different molecules

32
Q

Hydrophilic

A

water loving substance, usually rich in atoms of O or N

33
Q

Hydrophobic

A

molecules that do not dissolve in water like oils and waxes

34
Q

Capillary Action

A

combines cohesion and adhesion

35
Q

Properties of water

A
  1. Water is both cohesive and adhesive
  2. Water is a good solvent
  3. Water organizes nonpolar molecules
  4. Solid water is less dense than liquid water
  5. Water has a high specific heat
  6. Water has high heat of evaporation
36
Q

Three states of water

A

vapor, liquid, ice

37
Q

Exergonic Reaction

A

release energy by breaking high energy bonds to form lower energy bonds

38
Q

Endergonic

A

absorb energy, require energy to occur usually produces more complex molecules from simpler units

39
Q

Oxidation

A
40
Q

Endergonic Reaction

A

Low energy bonds are broken are broken to form high energy bonds

41
Q

Oxidation- Reduction (redox)

A

reactions involve electron transfer b/w reactants:
– Oxidation- Loss of electrons, tend gain O but lose energy.
– Reduction- Gain of electrons, tend to gain H and energy.

42
Q

Acids

A

compounds that release H+, pH less than 7

43
Q

Bases

A

compounds that accept H+ pH greater than 7

44
Q

pH

A

a measure of how acidic/basic water is.

45
Q

amphipathic molecule

A

chemical compounds that have both polar and nonpolar parts.