Lec 2.1 Specialized chromosome structure/ sequence and DNA packaging Flashcards

1
Q

What is a telomere?

A

region of repetitive nucleotide sequences at each end of a chromosome.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

What is the human telomere sequence?

A

TTAGGG

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What does a telomere do?

A

Protects the end of the chromosome

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Which telomere is longer? A G-rich strand or C-rich strand?

A

G-rich

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

How do euk solve the problem of having nucleases around?

A

G-rich strand folds over and pairs with a short stretch of DNA to form a t-loop.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Shortened telomeres are associated with what?

A

Shorter life span and increased incidence of disease

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

What are two ways that children can have shortened telomeres?

A

Lead exposure, stressed environments

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

What happens to your telomeres when you age?

A

the shorter they get

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Do telomeres contribute to that negative impact of aging or are they just a molecular clock?

A

Conclusion: we dont know

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

What is a centromere?

A

Region of a chromosome to which the microtubules of the spindle attach, via the kinetochore, during cell division.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What is a kinitochore?

A

group of proteins that attach at the centromere, that are responsible for events of chromosome segregation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What is a centriole?

A

Small, cylindrical cell organelle, located near the nucleus in the cytoplasm of most euk cells, that divides in perpendicular fashion during mitosis.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

What is the chromosomal locus essential for chromosome inheritance and genome stability?

A

Centromere

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

What is cohesin?*

A

Wraps around strands around the chromosomes and keeps them together during mit/meiosis. When signla comes in, it melts

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What happens if the kinetochore protein is mutated?*

A

Miscarriages.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

What happens when a chromosome breaks producing a fragment without a centromere?

A

Loss of a chromosome and a deletion of whatever chromosome was lost, and its genes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

What is important to fit the entire genome into such a compact place?

A

Supercoiling

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

What are topoisomerases responsible for?

A

adding and removing turns in the coil

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

What does the chromatin structure contain?

A

Euchromatin, heterochromatin, histone proteins

20
Q

If a chromatin structure is hyperacetylated it is?

A

Open active

21
Q

If a chromatin structure is hypoacetylated it is?

A

closed/ inactive

22
Q

Why are lysines important for histones?

A

Keeps DNA highly compacted, less likely for transcription

23
Q

What keeps histones and DNA together?

A

the charge between them. DNA is - and histones are +.

24
Q

What is a nucleosome? *

A

8 proteins, coming together to form this octomere of proteins that makes a ball that DNA can bind around

25
What is chromatin?
Nucleosome core, including proteins + DNA that allow wrapping and packaging of DNA
26
What is a chromatosome?
basically the nucleosome + linker
27
What are the several levels of organization for DNA packaging?
1. DNA. 2. Coiling happens. 3. Coil wraps around the histone octomere to make the nucleosome. 4. Nucleosomes coil around each other. 5. Chromosome
28
What is the fundamental repeating unit of chromatin?
the nucleosome
29
Where is euchromatin location?
Chromosome arms
30
Where is heterchromatin location?
centromeres, telomeres, and other places
31
What type of sequences does euchromatin have?
unique
32
What type of sequences does heterochromatin have?
Repeated
33
when is euchromatin replicated?
throughout S phase
34
when is heterochromatin replicated?
Late S phase
35
How often does transcription occur for euchromatin?
Often
36
How often does transcription occur for heterochromatin?
Infrequent
37
How common is crossing over for euchromatin?
Common
38
How common is crossing over for heterochromatin?
Not common
39
What are polytene chromosomes?
Strands of chromatin that have been replicated multiple times
40
What does DNase I sensitivity correlate with?
transcription or gene activity
41
How can epigenetic changes change chromatin structure?
methylation. Can be reversed.
42
What is epigenetics?
Heritable alteration of phenotype because of altered chromatin structure or the modification of DNA without changing the DNA sequence.
43
The bigger the genome the more what?
More repetitive sequences
44
The majority of repetitive sequences show their origin to be?
Retro viral transposons origin
45
What is Microsatellite DNA?
Tandemly repeated DNA motifs that range in length from 2 to 5 nucleotides, repeated 5-50 times.
46
What are Microsatellite DNA used for?
Mapping locations within the genome. Each person has a unique fingerprint of microsatellites, useful in forensics.