CMB1004/L03 Intracellular Compartments Flashcards

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1
Q

Give the 3 major types of transport.

A

Gated transport
Transmembrane transport
Vesicular transport

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2
Q

Give 2 examples of signal sequences.

A

Nuclear localisation signal
Mitochondrial signal sequence

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3
Q

Where are signal sequences targeted?

A

N-terminal end

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4
Q

Why are proteins imported into the nucleus? (3)

A

Structure, gene transcription and regulation

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5
Q

What does nucleus-cytoplasm transport occur through?

A

Nuclear pore complex (NPC)

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6
Q

What is gene transcription regulated by in activated T-cells?

A

NF-AT

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7
Q

What sequence is required for a protein to pass through the TOM/TIM complex in mitochondria?

A

Sigla sequence

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8
Q

Where does protein synthesis start?

A

Cytosol

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9
Q

Where do proteins translocate to during synthesis?

A

Into RER membrane or lumen

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10
Q

Where are mucins found?

A

Between epithelial cells and external mucosal surfaces

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11
Q

Where is the IgA1 receptor found?

A

On Fc region of protein

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12
Q

What does plgR (polymeric immunoglobulin receptor) recognise?

A

J chain reaction of polymerised IgA and IgM

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13
Q

Name a pro-inflammatory IgG variant.

A

IgG with galactose-deficient N-glycans

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14
Q

Name an anti-inflammatory IgG variant.

A

IgG with sialylated N-glycans

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15
Q

Where can proteins travel once inside the lumen or membrane or RER? (3)

A

Remain in RER
Travel to other organelles
Export to cell surface or be secreted

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16
Q

Where can water-soluble proteins travel?

A

Remain within organelles (lumen)
Plasma membrane

17
Q

Where can membrane-associated proteins travel?

A

Remain within organelle membranes
Plasma membrane

18
Q

What is vesicular transport essential for? (2)

A

Phagocytosis
Cell-to-cell communication
Quick response to environmental changes

19
Q

What is linked by the trans-Golgi network?

A

Golgi apparatus and surrounding organelles

20
Q

What do COPII protein coats cover?

A

ER

21
Q

What do COPI protein coats cover?

A

Golgi cisternae

22
Q

What do clathrin protein coats cover?

A

Vesicles secreted from the Golgi apparatus

23
Q

Which direction does the cis face of the Golgi apparatus face?

A

Inner/vesicles enter

24
Q

Which way does the trans face of the Golgi apparatus face?

A

Outer/vesicles leave

25
Q

What modifications occur to proteins in the Golgi apparatus?

A

Core oligosaccharide trimmed
Further sugars added/removed

26
Q

Which region are early acting enzymes found in the Golgi apparatus?

A

Cis

27
Q

Which region are late acting enzymes found in the Golgi apparatus?

A

Trans

28
Q

What kind of bacteria are preferentially phagocytosed by macrophages and neutrophils?

A

Antibody-coated bacteria

29
Q

What do lysosomes contain?

A

Acid hydrolases

30
Q

Name the 4 distinct degradation pathways in lysosomes.

A

Endocytosis
Macropinocytosis
Phagocytosis
Autophagy

31
Q

Name 3 acid hydrolases.

A

Nucleases
Proteases
Glycosidases
Lipases
Phophatases
Sulfatases
Phospholipases

32
Q

What is autophagy?

A

Degradation of unwanted proteins and organelles

33
Q

What is dysfunctional autophagy associated with? (3)

A

Infectious disorders
Neurodegenerative diseases
Cancer

34
Q

Name the 4 types of autophagy.

A

Macroautophagy
Microautophagy
Chaperone-mediated autophagy
Selective autophagy

35
Q

What is another name for selective autophagy?

A

Xenophagy

36
Q

What is microautophagy?

A

Uptake of cytoplasmic components by inward invagination of lysosomal membranes

37
Q

What is chaperone-mediated autophagy?

A

Direct transport of cytosolic proteins into lysosomes through translocons

38
Q

Name 2 types of secretory pathway.

A

Constitutive
Regulated

39
Q

What is a chimera?

A

An organism or tissue that contains at least two different sets of DNA, often from zygote fusion