bio diversity of living things Flashcards

1
Q

Random cell facts

A

The average human being is composed of around
100 trillion individual cells

It would take as many as 50 cells to cover the
area of a dot on the letter “i”

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2
Q

Spontaneous generation

A

people believed that animals
could come from non-living sources. They thought:
○ Frogs developed from falling raindrops
○ Mice and snakes came from hay and grain
○ Flies and maggots came from rotting meat

These ideas were followed because people
accepted what they were told

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3
Q

The cell theory

A

In 1838 a German Botanist (Matthias Schleiden) concluded that all plant parts are made of cells

In 1839 a German Physiologist (Theodor Schwann)
stated that all animal tissues are composed of cells

In 1858 a German Physician (Rudolf Virchow) concluded that all cells must arise from
preexisting cells

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4
Q

Discovery of cells

A

In 1665, English Scientist Robert Hooke discovered
cells while looking at a thin slice of cork

He described the cells as tiny boxes or a honeycomb

He thought that cells only existed in plants and fungi
________________________
In 1673 Anton Van Leeuwenhoek used a handmade microscope to observe pond scum

He discovered single-celled organisms that he called
animalcules

He also saw blood cells from fish, birds, frogs, dogs,
and humans

This was the first evidence that cells could be found
in animals and plants
________________________
After the Hooke and Leeuwenhoek discoveries very little advancements were
made

In the mid 1600s Francesco Redi (an Italian doctor and poet) designed a control
experiment

It took hundreds of years of experiments to convince people that spontaneous generation does not occur

He put dead snakes, eels, and veal in large wide mouthed vessels. He sealed one set with wax and left the other set
open. Decaying meat had maggots whereas the sealed
meat had no maggots. Wax
sealed vessels did not produce maggots because
flies were unable to reach the meat.

Redi’s critics said his closed jars had a lack of air, and since everything needs air no flies were able to grow. They did not believe that he proved anything.

He used mesh instead of wax to seal the jars. This allowed
air in but not flies. He found that flies laid eggs on top of the mesh (there were no maggots in the meat)

Reid concluded that all living beings come from seeds of the plants or animals themselves

In 1859 Louis Pasteur (a French chemist) entered a
contest sponsored by the French Academy of Sciences to prove or disprove Spontaneous Generation

He used swan-neck flasks that allowed air in but trapped dust and microbes

This showed that no growth occurred even after many days

He squashed the idea of Spontaneous Generation completely!

From here the next question arose: how did life on this planet start in the first place?

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4
Q

multicellular

A

made of many cells such as plants and animals

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5
Q

The ORIGINAL cell theory

A

The 3 basic components of the original Cell Theory were now complete:
1) All organisms are composed of one or more cells
2) The cell is the basic unit of life in all living things
3) All cells are produced by the division of preexisting cells

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5
Q

Cladistics

A

Cladistics is a branch of biology that determines the
evolutionary relationships between organisms based on
shared derived similarities

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5
Q

unicellular

A

made of one cell such as bacteria or amoebas

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5
Q

The MODERN cell theory

A

Today the Cell Theory contains 4 statements that build on the original Cell Theory.
1) The cell contains hereditary information(DNA) which is
passed on from cell to cell during cell division.
2) All cells are basically the same in chemical composition
and metabolic activities.
3) All basic chemical & physiological functions are carried out inside the cells.(movement, digestion,etc)
4) Cell activity depends on the activities of subcellular structures within the cell (organelles, nucleus, membrane)

The Cell Theory is now used for disease, health, and
medical research and cures (AIDS, Cancer, Vaccines,
Clothing, Stem Cell Research, etc.)

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5
Q

The Cell

A

A cell is a basic unit of living things
What types of activities characterize a living being?
* Metabolism (take in nutrition and eliminate waste)
* Growth
* Reproduction
* Movement
* Response to external stimuli
* Adaptation

Living organisms are either unicellular (made of one cell such as bacteria or amoebas) OR
multicellular (made of many cells such as plants and animals)
● Two main types of cells have been discovered:
1. Prokaryotic Cells: before nucleus
2. Eukaryotic Cells: true nucleus

Both Prokaryotic and Eukaryotic Cells:
→ Contain all four biomolecules (lipids, carbs,
proteins, nucleic acids)
→ Have ribosomes and DNA
→ Have a similar metabolism
→ Can be unicellular
→ Have cell and plasma
membranes or a cell wall

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6
Q

Prokaryotic Cells

A

before nucleus

  • Ancient, primitive cell
  • No nucleus
  • No membrane bound
    organelles (just ribosomes)
  • All are unicellular
  • Smaller and more simple
    than Eukaryotic Cells
  • DNA is single stranded and circular
    Example: all bacteria

Prokaryotes are single-celled organisms
● Prokaryotic microbes belong to the kingdoms
bacteria and archaea

There are three common shapes of prokaryotic microbes:
○ Spherical (cocci)
○ Rod-like (bacilli)
○ Spiral (spirilla)

Examples of bacteria:
-Gram positive
-Cyanobacteria
-Proteobacteria
-Spirochete
-Chlamydia

Archaea
Archaea were first discovered in environments with extremely harsh living conditions
● They are now grouped based on the three types
of extreme conditions in which they are found:

1)Halophiles: salt lovers (areas of high salt)
2)Thermophiles: heat lovers (areas of hot water)
3)Methanogens: lack oxygen (ie. landfills)
________________________
Prokaryote reproduction

All prokaryotes reproduce asexually
→ This means making identical offspring from one parent cell
● There are different ways asexual reproduction can occur

Prokaryotic cells reproduce using binary fission: one cell splits into two identical cells

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6
Q

Phylogenic species concept

A

Phylogeny (the history of the evolution of organisms) is
used to identify species
● Phylogenies are determined on the basis of developmental, structural and molecular traits
● Relationships are shown in a branching diagram called a phylogenetic tree

Phylogenic tree: Like a family tree, the roots or base of the
phylogenetic tree represent the oldest ancestral species

The upper ends of the branches represent present
day species

Forks in each branch represents the points in the
past at which an ancestral species split (evolved or
changed overtime) becoming two new species

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6
Q

Eukaryotic Cells

A

true nucleus

  • Evolved from a prokaryotic-like predecessor
  • Have a nucleus and nuclear envelope
  • Bigger and more complex than prokaryotes
  • Have membrane bound organelles
  • DNA is double stranded and forms chromosomes
  • Can be uni OR multicellular organisms

Example: animals, plants, fungi
________________________
Eukaryotes are complex organisms
● These organisms contain cells with organelles and nuclear membranes
● Eukaryotic organisms belong to the kingdoms
protista, fungi, plantae, and animalia

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6
Q

Classifying organisms

A

Greek philosopher Aristotle (4th century BC) began by
classifying all things into three categories:
■ Animal
■ Vegetable
■ Mineral
He grouped animals according to habitat (land, water, air)
○ 17th century Englishman John Ray first used the term
species while attempting to catalogue all organisms

Carolus Linnaeus (18th century Swedish naturalist) classified all then-known organisms into two large groups: Plantae and Animalia
● He grouped organisms into these two groups according to similarities of physical and structural features
● The groups to which Linnaeus assigned organisms are called taxa (singular: taxon)
● The science of naming organisms and assigning them to these groups is called taxonomy

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7
Q

Common ancestor

A

If two species share the same evolutionary history it means they have a fairly recent common ancestor

RECALL: we get our evidence of evolutionary relationships by:
→ looking at the fossil record
→ examining anatomy (ie. homologous structures)
→ examining physiology including internal processes
→ looking at DNA evidence

Evidence shows that in some way all organisms on Earth are genetically related

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7
Q

Species

A

A species is a group of organisms that can interbreed
in nature and produce fertile offspring
● Scientists have so far identified ~2 million species on
Earth; however, they estimate that there are approximately 5-20 million species
● Once an organism has been qualified as a separate species, a name must be assigned to this new
species
● A standard system for naming organisms is needed
that will be understood by any scientist, anywhere in
the world to reduce confusion, provide information on an organism’s structure, and indicate relationships

8
Q

Taxonomy

A

The science of naming organisms and assigning them to these groups

taxa (singular: taxon)

Plantae and Animalia
He grouped organisms into these two groups according to
similarities of physical and structural features

8 Main levels of taxa:
1.Domain
2.Kingdom
3.Phylum (Divisions in Plant and Fungi)
4.Class
5.Order
6.Family
7.Genus
8.Species

The highest level of classification (Domain) is the most broad and has the smallest number of common
characteristics

The lowest level of classification (Species) is the least inclusive and has the greatest number of common
characteristics

8
Q

Binary Fission

A

The cell divides itself into two, equal, identical
parts with the same DNA

9
Q

Binomial Nomenclature

A

Linnaeus created a system for naming plants and animals called binomial nomenclature

  • Binomial → two parts
  • Nomenclature → naming system
  • This system assigns each organism a two-part scientific name using Latin words
  • This two-part name is referred to as the species or
    scientific name

Example: the scientific name for humans is Homo sapiens

Example: Castor canadensis

FUN FACT! castor means beaver, and canadensis means from Canada

The full name is always italicized

Castor- Genus name
*Can be written alone or shortened as the first letter with a period
(ie. C. canadensis)

Domestic cat = Felis domesticus
Genus = Felis
species = domesticus

Domestic dog = Canis familiaris
Genus = Canis
species = familiaris

10
Q

Endosymbiont

A

a cell that is engulfed by another cell

10
Q

Dichotomous classification keys

A

Dichotomous classification keys are used to help place
organisms into the appropriate classification group
* Think of it as a road map to identifying an object!

  • It is a system for narrowing down the identification of a
    specimen one step at a time
  • In classification keys a series of two-part choices must be
    made, each choice leading to a new branch of the key
  • The end result is the name of the organism being identified
10
Q

Ecosystem Diversity

A

The variety of ecosystems in a biosphere
Ex: Algonquin park is made up of many ecosystems
→ Ecosystems with greater species diversity exhibit resilience (the ability to remain stable in the presence of disturbances

10
Q

Genetic Diversity

A

The variety of genes in a population of interbreeding individuals (Ex: different tail patterns in whales)
→ Genetic diversity within a population is known as the gene pool
→ Populations that lack genetic diversity are more susceptible to disease as something contagious could impact them all
→ Scientists assist struggling populations to increase genetic diversity (Ex: Florida Panther population declining so they introduced 8 female panthers to help recover the population)

11
Q

Three domain classification system

A

In the 1990’s, Carl Woese further developed the system of Biological Classification

*He developed a three-domain system (which comes before Kingdom in Linnaeus’ taxonomy)

  • Based on prokaryotes and eukaryotes he devised three
    domains, divided into several different kingdoms

The groups were renamed the Bacteria, Archaea, and Eukarya

SIX-KINGDOM CLASSIFICATION
To further divide the three domains, a six-kingdom system was devised and is still the most popular today

The Six-Kingdoms that can be used to classify all species:
1. Eubacteria
2. Archaebacteria
3. Protista
4. Fungi
5. Plantae
6. Animalia

11
Q

Species Diversity

A

The variety and abundance of species in a given area
Ex: a meadow with diverse
species

11
Q

Bacteriophage

A

viruses that infect and destroy bacterial cells (eaters of bacteria)

12
Q

COVID-19

A

The current consensus among the scientific community is that the virus stays in the lysogenic cycle for 3-5 days before you begin to feel ill
● Reports say that the virus remains in the lysogenic cycle for 14 days before phasing into the lytic cycle
● The COVID-19 coronavirus mutation discovered on December 29, 2019 is allowing many of its hosts to roam about oblivious to
their new attachment (asymptomatic)
○ This allows COVID-19 to acquire more and more hosts
● COVID-19 is a zoonotic virus meaning that another species of animal other than humans is where the virus genetically originated from (MERS in 2012 and SARS in 2003 were both zoonotic coronaviruses)

12
Q

Endosymbiosis

A

The theory that explains how eukaryotic cells evolved from the symbiotic relationship between two or more prokaryotic cells.

RECALL: a symbiotic relationship is an interaction between two different
organisms living close together that mutually benefit from each other

The theory suggests that mitochondria and chloroplasts were once small, free-living prokaryotes

Mitochondria → generates energy (ATP) for the cell
Chloroplast → conduct photosynthesis

They were engulfed by other, larger cells
* They remained intact and continued to function, benefitting the cell

Endosymbiont: a cell that is engulfed by another cell

Host Cell: a cell that engulfs another cell

Evidence: Similar features between chloroplasts, mitochondria, and prokaryotes:
❏ Membranes
❏ Circular Chromosomes
❏ Similar gene sequences
❏ Ribosomes were similar
❏ Divide by binary fission

12
Q

Vaccines

A

Vaccine: contains an agent that resembles the virus and is made from weakened or killed forms of the virus, or its surface proteins

Vaccines are thought to act as the initial exposure so that your immune cells could recognize and create an immune response (antibodies) against that particular virus

This will strengthen your secondary immune response, so that when exposed the virus can be destroyed immediately

As we are seeing in the world around us right now, there are different types of vaccines.

DNA/RNA based vaccines (including mRNA)
* Use pieces of genetic material that code for part of the virus
* Your body can use this injected genetic material as instructions to start copying the virus antigen
* Your body will recognize these instructions and will start creating an immune response ready to protect you if you encounter the virus

→ It is impossible to get the targeted virus from this type of vaccine
→ These vaccines can be quickly created based on genetic sequencing; however, if the virus mutates boosters may be required

Examples: Pfizer and Moderna Covid-19 Vaccines

Virus Vectors
* Use a weakened form of the virus that is incapable of causing the disease itself
* Your body will receive the virus antigen which will then trigger a strong immune response
* These vaccines have been around longer than mRNA vaccines
* Smallpox, Ebola, Zika, HIV, Influenza, Tuberculosis, etc.

→ Usually one single dose is enough to stimulate long-term
protection, even if the virus mutates
→ In some cases the body could develop an immune response to the antigen instead of the virus, making it less effective

Examples: AstraZeneca and Johnson & Johnson Covid-19 Vaccines

12
Q

Biodiversity and Natural Selection

A

Darwin proposed the theory of natural selection based on:
1. All members of a species display inherited characteristics
2. The number of offspring produced by individuals in a
species exceeds the number that will survive to adulthood
3. Some offspring, because of individual differences, are
better able to adapt to environmental conditions than
others
4. The better-adapted organisms pass on their
characteristics
to their offspring and the population changes
If none adapt then the species will go extinct overtime*
________________________
Sexual reproduction provides opportunities for genetic variation within a species

  • Genetic variation is important in an unstable environment so that changes in conditions do
    not result in the extinction of a species due to an inability of individuals to adapt
12
Q

Prions

A

Prions are non-viral diseases causing agents
● They are infectious particles that cause damage to nerve cells in the brain
● They are disease causing agents that lack RNA or DNA
○ Prions seem to behave like a virus but are not
● Disease results when prions change their molecular shape and become deadly

Example: Creutzfeldt-Jakob Disease (CJD)
→ A fatal brain disorder
→ Symptoms include memory problems, poor coordination,
behavioural changes, etc.

12
Q

Life cycles and reproduction

A

Eukaryotes have more reproductive diversity than prokaryotes

● Prokaryotes are unicellular organisms that usually divide
asexually

● Eukaryotes can use more complicated methods of reproduction

Binary Fission: the cell divides itself into two, equal, identical
parts with the same DNA

→ Multiple Fission (Asexual Reproduction): making multiple copies of itself at the same time

→ Sexual Reproduction: gametes have half the chromosomes
join to form a zygote with two sets of chromosomes

12
Q

Host Cell

A

A cell that engulfs another cell

12
Q

Multicellularity

A

Hypothesis: first multicellular organisms arose from colonies
created by dividing individual cells

  • Genes within these cells carried instructions to become
    specialized for different functions

Example: some cell groups became specialized in absorbing nutrients, while others become specialized in gathering information from the surrounding environment

12
Q

Multiple Fission

A

(Asexual Reproduction)
making multiple copies of itself at the same time

12
Q

Sexual Reproduction

A

gametes have half the chromosomes join to form a zygote with two sets of chromosomes

13
Q

Viruses

A

Viruses differ from both prokaryotic and eukaryotic cells
● They cannot sustain life outside of a host cell
○ Outside a cell viruses are dormant (inactive)
● They must invade cells and use the host cell’s internal machinery for survival and reproduction

Viruses are nonliving because:
1) They cannot live independently outside of the host cell

2) They are not prokaryotic or eukaryotic cells because they lack cytoplasm, organelles, and cell membranes

Viruses are small particles made up of a nucleic acid core & a protein coat (a capsid)

  • Viruses have either DNA or RNA (RNA is more susceptible to mutation)
    → Since there is genetic material, the viruses can exist within cells, make new copies & can spread to other cells
  • Their origin is unknown, but probably originated as genetic material that made its way outside of the cell & evolved a protein coat for protection
    ________________________
    classifying viruses
    Normally scientists will classify viruses based on:

1) Size and shape
2) Types of diseases they cause
3) Genome (set of genes) and type of genetic material (DNA or RNA)
4) Method of reproduction

DNA Viruses: tend to be less virulent & follow the Lytic Cycle of infection. The human immune system can detect & destroy DNA
viruses therefore an organism will detect a DNA virus within a
limited time frame

● DNA Virus Examples: chicken pox, shingles, warts

RNA Viruses: (70% of viruses) can remain undetected in an organism for a long period of time & spread throughout the body. Follow the Lysogenic Cycle, splicing their viral DNA into the host’s DNA and could
remain dormant for years. It isn’t until it is activated that the host immune system will detect it

● Will undergo mutation more frequently, giving more variants of the virus (some may be better at invading the host)

● RNA Virus Examples: Coronavirus, AIDs, rabies, measles
________________________
Viral reproduction: All viruses must undergo replication (copy the DNA) within the
host cell
● Viruses do not have their own proteins to be able to carry out this process on their own
● The host cell can be either a prokaryote or a eukaryote
depending on the type of virus
● The virus’ genetic material uses the host cell’s copying
machinery to produce multiple copies of themselves (new
viruses)
● Once the DNA is copied and made into proteins all of the
individual components of the virus are assembled within the
host cell

Viruses have two possible reproduction pathways: The Lytic Cycle or The Lysogenic Cycle

  1. The Lytic Cycle: DNA viruses deactivate the host mRNA & take control of the host’s machinery to make their own virus particles (potentially 1000 made). Once they are made, the new viruses destroy the host cell & are released to the neighbouring cells.

Attachment: proteins on the surface of the virus bind to protein receptors on the surface of the host cell’s membrane.

Entry: The virus injects its genetic material (DNA or RNA) into the bacterial cell.

Replication: The host cell makes more viral DNA or RNA and proteins.

Assembly: New viral particles are assembled.

Lysis and Release: The host cell breaks open and
releases new viral particles\

The Lysogenic Cycle: The virus enters and then attach their DNA to the host’s chromosomes.

  • When the viral DNA enters the host cell’s chromosome it may remain dormant (inactive) and later activate and instruct the host cell to produce more viruses through the lytic cycle.

RNA viruses get access to the host cell and change the cell’s genetic material to its own
→ It is then replicated every time the host goes through mitosis
→ This lets it spread without being detected and destroyed by the host immune system

→ Once activated, it will follow the Lytic Cycle and can be detected by the organism; however, at this point too much damage has already been done

Lytic Cycle Viruses: newly formed viruses burst from the host cell, usually killing it
→ In multicellular hosts these newly formed viruses infect
neighbouring cells
Result: damage to host varies

Lysogenic Cycle Viruses: effects to the host might not be
immediate
→ Some viruses may be dormant within the cell and only go through a lysogenic cycle for a prolonged period of time
→ The virus cannot be detected and no symptoms appear
→ The virus is able to spread into other cells through replication without actually killing the host cells
________________________
Since viruses can transfer their genetic material from one cell to another (both within and between different species) they are a great genetic engineering application

● Bacteria contain small segments of DNA in structures called PLASMIDS which can be used to splice a specific DNA sequence and put it into a plasmid, allowing it to replicate and generate many copies of the desired DNA sequence for future study

13
Q

Retrovirus

A

Lysogenic viruses can infect a host cell and stay dormant by
incorporating their genetic material into the host DNA
● Retroviruses use the enzyme Reverse Transcriptase to turn their RNA into DNA, allowing them to add themself into the host genome
● When viral DNA becomes part of the host DNA it is called a provirus

In a normal cell, DNA is transcribed into RNA and then RNA is translated into proteins.

→ When a retrovirus is inside of a cell, the first two steps of the process are switched.

Rather than DNA -> RNA -> Proteins, it’s RNA -> DNA

● Reverse transcription lacks the usual proofreading of DNA
replication

● This allows the retrovirus to mutate often!

  1. Retrovirus attaches to host cell and Viral RNA is copied into DNA by reverse transcriptase
  2. The proviral strand will be integrated into the host’s DNA.
  3. The DNA becomes transcribed and translated to produce more viruses without
    destroying the cell.
  4. Every time the host divides, the proviral DNA is replicated along with host DNA