Protiens Flashcards

1
Q

what does organic mean?

A

Containing carbon

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2
Q

what are the roles of protiens

A

-structural
-metabolic
-transport

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3
Q

what elements do amino acids contain

A

carbon, hydrogen, oxygen, nitrogen and sometimes sulphur and phosphate

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4
Q

Polymer of amino acid

A

Polypeptide

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5
Q

Carboxyl/acid group

A

c=0
-oh

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6
Q

amino group

A

N-h
-h

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7
Q

What’s an R group

A

-variable group

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8
Q

how many amino acids are there?

A

20, 8 essential ones

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9
Q

what does essential mean

A

must get them in our diet

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10
Q

properties of amino acids

A

-they’re soluble
-they’re amphoteric

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11
Q

how amino acids differ

A

-size
-polarity
-charge

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12
Q

what are the positive and negative amino acids called

A

positive- base
negative- acid

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13
Q

how do amino acids join together

A

join by a reaction between amino group of one protein and carboxyl group of the other amino acid
-this is a condensation reaction

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14
Q

bond/link between amino acids

A

peptide link/bonds

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15
Q

similarity and difference between glyosidic bond and peptide bond

A

similarity- condensation build up and hydrolysis breaks down
difference- peptide has link between C-N and glyosidic bond between
C-O-C

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16
Q

amphoteric

A

amino group accepts H+ ions and carboxylic group donates H+ ions
-in acidic environment, amine accepts H+
-in alkaline environment, carboxyl/acid group donates H+

17
Q

primary structure

A

specific sequence of amino aicds- one long chain, coded by the DNA of the cell

18
Q

secondary structure

A

form when polypeptide chain takes up a particular shape through folding

19
Q

forms of secondary structure

A

alpha helix and beta sheet

20
Q

how is alpha helix and beta pleated sheet formed

A

hydrogen bonds between hydrogen of amine and oxygen of carboxyl

21
Q

tertiary structure

A

secondary structure folded further to form complex shape due to 4 different bonds between acids

22
Q

4 types of bond in tertiary protiens

A

Disulphide, ionic, hydrogen, hydrophilic/phobic interactions

23
Q

hydrogen bonds

A

form between hydrogen atoms with slight positive charge and other atoms with a slight negative charge
-amino and carboxyl group
-give protein strength

24
Q

ionic bonds

A

between carboxyl and amino groups that are part of R groups, positive and negative groups strongly attracted to each other

25
disulphide links
-the R group of amino acid cysteine contains sulphur -disulphide bridges formed between the R groups of two cysteines, strong covalent bonds
26
hydrophobic and hydrophilic interactions
-hydrophobic parts of R groups associate together in centre of polypeptide in water (rotate inwards) -hydrophilic parts associate with each other on the edge of the polypeptide to be close to water (turn outwards)
27
quaternary structure
more than one polypeptide chain, arranged in a complex structure
28
example of quaternary protein and its structure
Haemoglobin, contains the haem group which bonds to the o2 and polypeptide chains
29
strong to weakest bonds
ionic, disulphide, hydrogen
30
properties of fiberous proteins
-mostly insoluble -not folded into a complex 3D shape -strong, long molecules -have high proportion of amino acids with hydrophobic R groups -repetative AA sequence in primary structure creates organised structure, compact
31
properties of globular proteins
-folded to keep hydrophobic R groups inside and hydrophillic R groups outside -soluble in water -spherical in shape -must be soluble for processes such as chemical reactions, immunity and muscle contraction
32
example of globular protein
insulin- transported in blood so must be soluble
33
example of fiberous protein
-keratin and elastin
34
structure of heamaglobin
globular, quaternary protein with 4 subunits, 2 alpha globin and 2 beta globin chains- each subunit has one haem that has iron which binds to oxygen
35
denaturisation of proteins
-typically effect secondary , tertiary or quintenary structures but doesn't affect peptide bonds in primary structure
36
features of primary structure
-sequence of AA's -peptide bonds
37
features of secondary structure
-hydrogen bonds -initial folding of protein chain -alpha helices and beta pleated sheets
38
features of tertiary structure
-overall 3D shape begins to form -ionic bonding
39
features of quaternary structure
-alpha and beta subunits -prosthetic groups -multiple chains