Prokaryotic and Eukaryotic gene regulation Flashcards

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1
Q

cis-regulating factors

A

are DNA sequences on the same DNA strand as the gene they regulate

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2
Q

trans-regulating factors

A

are proteins that bind to cis-element DNA sequences

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3
Q

what are the different proteins involved in prokaryotic gene regulation and what do they do?

A

there are activators and repressors that control the rate of RNA synthesis (transcription)

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4
Q

what do activators do and what type of control do they have?

A

they recruit RNA polymerase and increase transcription with a positive control

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5
Q

what are repressors and what type of control do they have?

A

they block RNA polymerase and inhibit transcription with a negative control

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6
Q

what is the role of small effector molecules in transcriptional regulation, and the 3 different types

A

they exert the effects by binding to activator or repressor.

inducers, corepressors, inhibitors

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7
Q

what do inducers do

A

they either:

  • bind to activators and cause them to bind to DNA
  • bind to repressors and prevent them from binding to DNA
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8
Q

what do corepressors do

A

they bind to activators and cause them to bind to DNA

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9
Q

what do inhibitors do

A

bind to activators and prevent them from binding to DNA

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10
Q

what is an operon

A

a regulatory unit containing multiple genes under the control of a single promoter

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11
Q

the parts of lac operon

A

promoter, CAP site, operator, protein-encoding genes ( lacZ, lacY, lacA), terminator

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12
Q

encodes for a repressor protein

A

Lacl

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13
Q

why cant RNA polymerase reach the promoter when the repressor is bound

A

repressor prevents the RNA polymerase to continue transcription because of its lack of small effector molecules binding to repressor

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14
Q

what are eukaryotic transcription factors

A

they are proteins that aid in regulating RNA polymerase’s ability to transcribe a gene

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15
Q

general transcription factors are required for?

A

binding of RNA polymerase to the core promoter

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16
Q

what regulates the rate of transcription in eukaryotic gene regulation

A

regulatory transcription factors

17
Q

Difference between TFIID and Activator proteins

A

TFIID are general transcription factors that bind to TATA box and recruits RNA polymerase
Activator proteins aid TFIID in recruiting TATA box, RNA polymerase, and interacts with coactivators

18
Q

what do mediator proteins do and what are the two types

A

they mediate the interaction between transcription factors and RNA polymerase.
Theres:
Transcriptional activators
transcriptional repressors

19
Q

what are regulatory/control elements for

A

they recognize sequence patterns located near core promoter and these proteins bind to these elements, impacting transcription.

20
Q

difference between up and down regulation

A

up-regulation are usually with activators that increase the rate of transcription and bind to enhancer elements .
down-regulation involves repressors that decrease rate of transcription and binds to silencer elements

21
Q

3 major epigenetic mechanisms

A
  1. reversible mod. of DNA by add/removal of methyl groups
  2. alt. of chromatin by add/removal of chemical groups to histone proteins
  3. regulation of gene expression by small, noncoding RNA molecules
22
Q

plays a role in gene regulation and is associated with decreased gene expression

A

DNA methylation-addition or removal of methyl groups to or from bases in DNA

23
Q

how can methylation repress transcription

A

by preventing transcription factors from binding with the DNA

24
Q

major epigenetic mechanisms in eukaryotes

A

DNA methylation and histone modification

25
Q

Histone modifications alter

A

chromatin conformation and protein interactions with the DNA strand

26
Q

3 ways to modify histones

A

acetylation, methylation, and phosphorylation

27
Q

which histone modification makes genes on nucleosomes available for transcription and is reversible

A

histone acetylation

28
Q

chromatin domains

A

heterochromatin-highly condensed (not acetylated)

euchromatin-less condensed (acetylated)

29
Q

remodeling complexes may alter nucleosome structure by:

A
  • altering the contacts between DNA around the nucleosome
  • altering the path of the DNA around the nucleosome
  • altering the structure of the nucleosome core itself
30
Q

transcriptional activation involves changes in

A

nucleosome locations, nucleosome composition, and histone modifications

31
Q

why do we need to regulate gene expression?

A

response to environment, metabolism, cell division, development in eukaryotes