How Genes direct the production of proteins Flashcards

1
Q

what is mRNA and what is it used for

A

messenger RNA. translated into proteins

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2
Q

what is tRNA and what is it used for

A

transfer RNA. transfer amino acids to the growing peptide chain

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3
Q

what is rRNA and what is it used for

A

ribosomal RNA. encodes ribosomal proteins

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4
Q

what is microRNA used for

A

block translation of specific mRNAs and regulate gene expression

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5
Q

what are siRNA used for

A

small interfering RNA. turn off gene expression by directing the selective degradation of mRNAs

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6
Q

what is snoRNA and what is it used for

A

small nucelolar RNAs. process and chemically modify rRNAs

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7
Q

what are scaRNAs

A

small cajal RNAs. modify snoRNAs and snRNAs

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8
Q

what are noncoding RNAs used for

A

telomere synthesis, X- chromosome inactivation and protein transport into the ER

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9
Q

what is the order of abundant RNA type

A

rRNA > tRNA > mRNA

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10
Q

what are most protein coding genes transcribed as

A

RNA polymerase II

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11
Q

how does transcription start mechanism

A

TBP/TFIID binds to TATA box
- TFIIB binds to complex
-TFIIB binding leads to other factors binding and eventually RNA polymerase II

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12
Q

can RNA fold on itself

A

yes

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13
Q

what does TFIIB recognize and

A

recognizes BRE element and accurately positions RNA polymerase at the start site of transcription

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14
Q

what genes does RNA polymerase I work with

A

rRNA

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15
Q

what genes does RNA polymerase II work with

A

all protein coding genes, snoRNA, miRNA, siRNA, and most snRNA

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16
Q

what genes does RNA polymerase III work with

A

tRNA, rRNA, some snRNA

17
Q

what are the order of events in mRNA processing

A

-capping
-splicing
-editing
-polyadenylation
-transport

18
Q

what performs RNA splicing

A

spliceosome

19
Q

what is the spliceosome made of

A

snRNAs with 7 protein subunits to form a SNP

20
Q

what snRNAs are involved in splicing

A

U1, U2, U4, U5

21
Q

what do the snRNAs do

A

provide proper base pairing with the mRNA

22
Q

how does splicing occur

A

adenosine residues in the intron sequence undergoes nucleophilic attack at junction of intron and exon

23
Q

how many genes does the human genome have

A

20,000-25,000

24
Q

how many proteins does the human proteome have

25
what does the tropomyosin gene do in alternative splicing
splices out different exons to make specific tissues
26
where does capping occur
5' end
27
where does polyadenylation occur
3' end
28
when does the 5' cap and splicing occur
as soon as the hnRNA emerges from the RNA polymerase
29
how does miRNA regulate translation
- bind to 3' UTR of target mRNA to form a RISC - suppress protein synthesis and/or induce mRNA degradation - each miRNA can target mutliple different mRNAs
30
what is the mechanism of miRNA
dicer clips bubble to create miRNA that binds to proteins that make up argonaute protein complex, binds to mRNA then interferes with translation
31
what does commaless mean
read from beginning to end so reading frame is critical
32
what does degenerate mean
more than one codon makes the same amino acid
33
which base in the codon is less specific
the third
34
how many stop codons are ther
3
35
what is the only start codon
methionine- AUG
36
what is roberts syndrom
prenatal growth retardation, craniofacial abnormalities such as cleft lip and limb malformations
37
what does the mutation of ESCO2 in roberts syndrome lead to
decreased rDNA transcription
38
what determines what gets spliced out
nucleotides in intron sequence