Final Exam Review from list Flashcards

1
Q

L1: what elements are most common in living organisms

A

HONC

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2
Q

L1: what is an electron, neutron and proton? how do they affect an element

A

electron- +1 charge, in nucleus, ID element mass

Neutron- no charge, in nucleus, give isotope mass

electron= -1 charge, in cloud, charge bonding

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3
Q

L1: what is mass number and atomic number

A

mass number is weight, proton and neutrons

atomic number is how it’s IDed how many protons

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4
Q

L1: characteristics of alpha, beta, gamma radiation

A

alpha: helium nucleus change atomic mass by 4 and atomic # by 2, penetrate top skin layer
beta: nuclear electron, atomic number +1 , sub-cutaneous
gamma: photon- energy wave, no effect on numbers, penetrate deep

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5
Q

L1: Isotopes vs elements

A

isotopes are different forms of the same element different number of neutrons. Only mass changes

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6
Q

L1: Radioactive Particles include

A

alpha, beta gamma

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7
Q

L2: Bohr Model - Absorption, Excitation, Relaxation, Fluorescence

A

absorption-
excitation -
relaxation -
fluorescence -

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8
Q

L2: Quantum Model – Orbitals and how they are organized

A

orbital: location and wave-like behavior of electrons

shell, subshell, orbital

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9
Q

L2: shell, subshell and orbital

A

shell: pathway followed by electrons around an atom’s nucleus ex. the 1st, 2nd, 3rd, 4th,etc shell(everything inside)
subshell: pathway in which an electron moves within a shell ex. s,p,d,f
orbital: describe wave-like behavior of an electron. ex. 1,3,5,7

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10
Q

L2: Electron configurations

A

where electrons go:

SPDF

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11
Q

L2: periodicity - electronegativity and atomic radius trends

A

electronegativity trend: right top is highest

atomic radius trend: left bottom

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12
Q

L2: valence shell and octet rule

A

valence shell: outer most shell that contains electrons

octet rule: elements are most stable when they fill their outermost S and P subshell

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13
Q

L2: Lewis dot structure

A

how many electrons in outer most shell and draw dots either 8 or less

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14
Q

L3: Ions – Anion vs Cation, from which rows in the periodic table?

A

cation: ion with pos. charge, gave up electron. first 3 rows
anion: ion with neg. charge, took electron last 3-4 rows

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15
Q

L3: Covalent Bonds – Polar vs Non Polar.

How many bonds does H, O, N, C want?

A
polar: share bonds, one wants it more
non-polar: share bonds, both want it the same amount
H: wants 2 bonds
o: wants 2 bonds
N: wants 3 bonds
C:  wants 4 bonds
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16
Q

L3: Electronegativity (Ionic, Polar, Non-Polar, how does HONC relate to this?

A

How bad element wants to steal or give away their electrons. Non-polar equal sharing. Polar- unequal sharing. Ionic: take/give up electron. - O>N>C=H +

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17
Q

L3: Single, Double, Triple bond shapes and properties

A

single: tetrahedral and freely rotate
double: trigonal planar, can’t rotate
triple: linear, can’t rotate

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18
Q

L3: How and why do chemical reactions occur?

A

when chemical bonds between atoms are being broken or formed

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19
Q

L3: What does equilibrium mean? What is K? What is G?

A
equal rates forward and backwards, equal energy 
add reactant =forward, 
add product = reverse, 
remove reactant = reverse. 
remove product = forward
K= rate of reaction  
G = 0 energy used
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20
Q

L4: what bonds are weak bonds

A

Hydrogen and VDW and Ionic

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21
Q

L4: Ionic when in water what happens to the charge, strength, etc.

A

Ionic bonds: electron is taken, in water, bond is weak, breaks and h2o surrounds it. still has partial charges

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22
Q

L4: Hydrogen bonds define

A

h-bonds: partial charges of a neg. and pos. attract

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23
Q

L4: Van Der Walls define and who bonds together

A

VDW: temporary attraction when long chains are by each other and the electron is close to outside element, the other side is partial neg. and when the electron goes to the other side, they swap positions

nonpolar weak bonds, induced

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24
Q

L5: Why is water so special?

A

float when solid, H bonding

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25
Q

L5: Cohesion

A

water w/ water - hydrogen bonds

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26
Q

L5: Adhesion

A

water w/polar substance- hydrogen bond

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27
Q

L5: what is specific heat

A
cal = 1 gram raised 1 degree C
cal = g x temp change
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28
Q

L5: % solution

A

= g solute/100 mL solution

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29
Q

L5: What is a mole?

A

unit of measurement ex. a dozen = 12 eggs

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30
Q

L5: Molar solution

A

mole solute/ L solution

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31
Q

L6: How to calculate pH

A

pH = -log [H+]

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32
Q

L6: How to calculate pOH

A

pOH- = -log [pH-]

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33
Q

L6: pH and pOH together is equal to what number? What equation

A

pH + pOH- = 14

[H+] x [OH-] = 1 x 10^ -14

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34
Q

L6: Buffer

A

resists change

HA(weak acid) dissociates H+(proton) and A-(conjugate base)

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35
Q

L7: what is an isomer

A

same molecular formula, different structure

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36
Q

L7: difference of Structural, Geometric, Enantiomers, Diastereomers isomers

A

Structural: same molecular formula, different pattern of bonds, atoms connected in different order

Geometric: same molecular formula, same bond pattern, different spatial arrangement around a double bond (cis or trans)

Enantiomer: mirroring the bonds from the two

Diastereomer: mixture of same bond and mirrored bonds

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37
Q

L8: Alkyl structure,

A
H
    I
R-C-R         Non-polar
    I
    H
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38
Q

L8: sulfhydryl structure,

A

R-S-H

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39
Q

L8: hydroxyl structure,

A

R- O-H

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40
Q

L8: carbonyl structure

A

.. O
.. II
R-C-R

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41
Q

L8: carboxyl structure,

A

.. H
.. II
R-C-OH

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42
Q

L8: phosphate structure,

A
......    O
 ...  ....     I
R-O-P-OH                    Acidic, polar ionic
........        I
 ......      OH
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43
Q

L8: amino structure

A

… H
… I
R-N-H

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44
Q

L8: Polysaccharide monomer and bond name

A

monosaccharides and Glycosidic

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45
Q

L8: Protein monomer and bond name

A

Amino acids and peptide

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46
Q

L8: Nucleic Acid monomer and bond name

A

nucleotides and phosphodiester

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47
Q

L8: lipids monomer and bond name

A

fatty acid and glycerol, and ester

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48
Q

L8: condensation is when what happens

A

when a bond forms and water is a byproduct

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49
Q

L8: hydrolysis is when what happens

A

water used to break bonds, put back in

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50
Q

L9: Names3 types of Monosaccharides

A

Fructose
galactose
ribose/deoxyribose

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51
Q

L9: Names/types of Disaccharides

A

Maltose=glucose + glucose
sucrose=glucose + fructose
lactose=glucose + galactose

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52
Q

L9: define of Oligosaccharides and function

A

sugars of 3-40 monomers, many different simple sugars,
highly branched

cell recognition/signaling and cell defense

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53
Q

L9: Names/types of Polysaccharides animals/plants

A

starch(plants), glycogen(animals), cellulose(plants), chitin(insects)

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54
Q

L9: Chemistry name for a mono saccharides

A

glucose

55
Q

L9: Functional Groups common to carbs.

A

hydroxyl and carbonyl

56
Q

L9: What are the monomers, polymers, bond between monomers, functional groups used. of carbs

A

two or more monosaccharides held together by glycosidic bond from condensation between hydroxyl and hydroxyl

57
Q

L9: Alpha 1-4, alpha 1-6, beta 1-4: structure, polymers, plants vs. animals

A

storage–> alpha-monomers
structural –> beta monomers
storage:

plants –> 1) amylose alpha 1-4 helical. 2) amylopectin: alpha 1-4 helical and alpha 1-6 branched. 3) animal –> glycogen: a1-4 helical and a1-6 branched

structural:
plants –> 1) cellulose: b1-4 lines (wood). animals –> 2) chitin b1-4 lines (exoskeleton)

58
Q

L10: functional groups common to fats

A

carboxyl and hydroxyl

59
Q

L10: What are the monomers, polymers, bond between monomers of fats

A

polymer: lipid
monomer: fatty acid& glycerol
bond: ester

60
Q
L10: Differences between saturated/unsaturated.
state at room temp
where comes from
structure 
bonding
A
saturated:
solid room temp
from animals
structure- linear
max hydrogen bonds and no double bonds
unsaturated: 
liquid room temp
1 or more double bonds
double bond replace 2 hydrogen
crocked if cis/ straight across if trans, in plants
61
Q

L10: What is a phospholipid?

A

2 fatty acids (hydroxyl) tails and phosphate (polar head)

create bilayer

62
Q

L10: What makes a fat more liquid vs. solid?

A

bonding, if there are max hydrogen bonds it’s solid, if there are bonds missing or double, liquid

63
Q

L11: Functional Groups common to nucleic acids.

A

Hydroxyl and Phosphate

64
Q

L11: monomer, polymer and bond between monomer of nucleic acids

A

polymer: nucleic acids
monomer: nucleotides
bond: phosphodiester

65
Q

L11: Differences between DNA and RNA

A

DNA:
nucleus, long term info storage, double stranded
RNA:
in cytosol, short term info(messenger), single strand, protein synthesis

66
Q

L11: Purine vs Pyrimidine

A

purine: two ringed

pyrimidine 1 ring

67
Q

L11: Central Dogma - DNA to RNA to Protein

A

DNA split, RNA comes in and reads a little bit and takes out of nucleus and give to ribosomes. Ribosomes translate to protein

68
Q

L12: Functional Groups common to amino acids.

A

amino and carboxyl

69
Q

L12: What are the monomers, polymers, bond between monomers to amino acids

A

monomer: amino acid
polymer: protein
bond: peptide

70
Q

L12: Primary, Secondary, Tertiary, Quaternary

A

Primary: amino acid sequence
Secondary: Hydrogen backbone, helices or sheets
Tertiary: bonds rest of the molecule, 3D structure
Quaternary: associated with 2 or more folded peptides into a protein

71
Q

L12: What does denaturation do? 4 things

A

break all weak bonds
don’t break covalent bonds
secondary, tertiary and quaternary
heat, detergent, strong acid/strong base

72
Q

L13: What makes up a plasma membrane? Asymmetric why?

A

lipids and proteins, phospholipid bilayer.
asymmetric because lipids from the top can’t 180 and go to the bottom

both sides of the phospholipid are different from each other

73
Q

L13: Types of proteins and oligosaccharides on the plasma membrane

A

transmembrane
integral
peripheral
lipid anchored protein

Glycolipids and glycoprotein

74
Q

L13: FRAP and Hybridomas

A

FRAP: a cell was coated in a fluorescent color and a part of the cell was bleached. Waited to see if the bleach separated

Hybridomas: part of a human cell (colored) and part of a mouse cell (colored) and waited to see if the color mingled together

75
Q

L13: How do plants and animals govern membrane fluidity?

A

plants: chain/tail length
cis unsaturated/ saturated

animals: cholesterol “fluidity buffer”
regulate internal temp

76
Q

L14: What is part of the endomembrane system? 7 organelles

A

nucleus, RER, SER, Golgi, Lysosome, Plasma Membrane, Vacuole

77
Q

L14: Structure and function of the organelles

A

nucleus: holds DNA
RER: Protein synthesis
SER: phospholipid synthesis
Golgi: receive, ships, processes protein and lipids and exports
Lysosome: break down macromolecules, hydrolases
Plasma Membrane: outer cell membrane
Vacuole: unique to plant cells

78
Q

L14: Differences between animals and plants?

A

plant: double membrane, chloroplast, thylakoid, DNA floating around
animal: 1 membrane, dna in nucleus,

79
Q

L15: Semi-autonomous organelles?

A

organelles with DNA, plant and animals

80
Q

L15: Structure and function of peroxisome, mitochondria, chloroplasts

A

peroxisome: single membrane w/ crystalline core. detox, get rid of Oxygen and oxidizes large fatty acids
mitochondria: powerhouse of cell, make ATP, double membrane, matrix and circular DNA
chloroplasts: solar powerhouse, triple membrane, thylakoid and circular DNA

81
Q

L15: Structure and function of microtubules, actin filaments, intermediate filaments

A

microtubules: tube, chromosome separation, cell motility (part of cell move but not whole)

actin filaments: 2 stranded rope, cell division, cell movement and muscle contraction

intermediate filaments: cable/rope(bungee cord) resist pulling forces, give nucleus its shape, connect skin cells

82
Q

L16: Difference between prokaryotes and eukaryotes

A

prokaryotes: bacteria, no nucleus (nucleoid)
eukaryotes: animal/plants, circular DNA

83
Q

L16: Difference between bacteria and archaea

A

Bacteria contain peptidoglycan in the cell wall; archaea do not

84
Q

L16: Difference between gram+ and gram-

A

gram+ thick layer of peptidoglycan, protect cell

gram- thin peptidoglycan layer, less protection

85
Q

L16: Define the 3 types of DNA sharing

A

transformation: eats a plasmid
transduction: bacteriophage lands on bacteria, abducts some bacteria DNA, breaking the og DNA, some of the OG DNA gets sent off and gives it to a diff. bacteria
conjugation: attach bacteria together sex pili and transfer plasmid

86
Q

L17: Structure and types of viruses

A

Structure
genome: composed of nucleic acids, sd dna, ds dna, ss rna, ds rna

protein coat: called capsid, package and protect genomic material

viral envelope: outer membrane of phospholipids and proteins, stolen from host, still has viral glycoproteins

accessories:proteins essential for viral life cycle
not all viruses need
help virus carry out job
allows virus to do things host can’t do

87
Q

L17: Stages of Lysogenic and Lytic

A

Lytic: 1. attachment

  1. entry
  2. synthesis
  3. assembly
  4. release

Lysogenic: 1. attachment

  1. entry
  2. integration
  3. activation
  4. synthesis
  5. assembly
  6. release
88
Q

L17: How does a vaccine work?

A

destroy virus
part of virus
can’t give you the illness
vaccines are preventative doesn’t cure it

89
Q

L18: Anabolic vs. Catabolic

A

Anabolic: building something up
Catabolic: a catastrophe
breaking down

90
Q

L18: Potential vs. Kinetic

A

Potential energy is the stored energy

Kinetic energy is the energy of an object or a system’s particles in motion

91
Q

L18: Define 1st and 2nd laws of thermodynamics using enthalpy, entropy, and free energy.

A
  1. energy is never created or destroyed
  2. entropy(chaos) of the universe is always increasing
    * *no energy transfer is 100% efficient

enthalpy: total potential energy
entropy: energy/heat lost during reaction
free energy: energy available to do work
useful energy

92
Q

L18: Delta G >0; <0; =0

A
ΔG >0:requires energy
endergonic-takes energy
non-spontaneous = must be forced to happen
ΔG <0:give off energy
exergonic- releases energy
spontaneous- naturally happens
ΔG  =0: reaction is at equilibrium
93
Q

L18: How can you get a non-spontaneous reaction to become spontaneous?

A
  1. change temp
  2. add reactants remove products
  3. couple endergonic with an exergonic reaction
94
Q

L19: Energy of Activation?

A

energy needed to go ‘over the hump’/ strain and pull chemical bonds before being broken an formed into new and release energy

95
Q

L19: How can you change reaction kinetics/rate?

A

add catalyst
add reactant
remove product
change temp

96
Q

L19: How can you regulate an enzyme?

A

phosphorylation
temp
pH
cofactor/coenzyme

97
Q

L19: How can you inhibit or activate and enzyme? Competitive, Non-Competitive, Feedback

A

Competitive inhibition: blocks active site
Non-competitive regulation: dont touch active site

if open and an enzyme attaches to it (not in the active site) it will become inactive
BUT
if active site is closed and an enzymes attaches to it (not active site) it will become active

Feedback regulation: if an substrate somewhere in the line comes and binds to the enzyme
if attach to active site its called competitive
if attach to nonactive site it’s called non-competitive

98
Q

L20: Redox; OilRig

A

reduction oxidation
oxidation
is
loses electrons

reduction
is
gaining electrons

99
Q

L21: Where does glycolysis happen?

A

cytosol

100
Q

L21: What goes in and what comes out glycolysis?

A
in:1 glucose
2 ATP 
2 Pi
4 ADP
2 NAD+

out: 2 Pyruvate
2 ADP
2 NADH
2 H2O

101
Q

L21: Where does fermentation happen?

A

cytosol

102
Q

L21: What goes in and what comes out fermentation?

A

in: pyruvate and NADH

out: Lactate or ethanol and co2
NAD+

103
Q

L21: What is anaerobic vs aerobic? Why would a cell use one or the other?

A

anaerobic: no oxygen
produce energy without the presence of oxygen

aerobic: has oxygen, energy can continue to other parts of the cell respiration

104
Q

L21: PFK?

A

phosphofructokinase (PFK) is negatively inhibited by ATP and citrate and positively regulated by ADP.

105
Q

L22: Where are Pyruvate bridge, Citric Acid Cycle, Beta Oxidation, electron transport chain

A

Pyruvate bridge: mitochondria
Citric Acid Cycle: matrix
Beta Oxidation: mitochondria
electron transport chain: inner membrane mitochondria

106
Q

L22: what goes in and out of Pyruvate bridge, Citric Acid Cycle, Beta Oxidation, deamination…

A

Pyruvate bridge: in: pyruvate
NAD+
CoA

out: Acetyl-CoA
NADH
CO2

Citric Acid Cycle: in:1Acetyl-CoA
3 NAD+
1 FAD
1 ADP+Pi

out:2 CO2
3 NADH
1 FADH2
1 ATP
1 CoA

Beta Oxidation: in: NAD+ and FAD

out:NADH and fADH2

electron transport chain: in: NADH
FADH2
O2
H+
Pi and ADP

out: H2O
ATP
NAD+
FAD

107
Q

L22: what is deamination

A

Lysosome through hydrolases will break down protein to amino acids

Remove amino, left with hydroxyl,

Put in kreb cycle based on number of carbons

108
Q

L23: Where and how are NADH and FADH2 used?

A

NADH goes to complex 1

FADH2 goes to complex 2

109
Q

L23: What is the role of Complex 1, 2, 3, 4?

A

transfer electrons

110
Q

L23: What does oxygen do?

A

take H+ and make water

111
Q

L23: What does the ATP synthase do?

A

turbine, brings H+ to the inside of matrix and create ATP

112
Q

L24: What is absorption? Where is light absorbed in photosynthesis?

A

def: process in which light is absorbed and converted into energy

chloroplast

113
Q

L24: Where do the light reactions happen?

A

thylakoid

114
Q

L24: What goes in and what comes out?

A

In:H2o
NADP+
light
ADP +Pi

Out: NADPH
O2
H+
ATP

115
Q

L24: What are pigments and photosystems?

A

pigment: light capturing molecule
photosystem: gather light, collect energy and pass through complex structure that can collect light and pass that energy alone in excited electrons

116
Q

L24: What types are light are the best and which are the worst for photosynthesis?

A

best: purple, red and blue
worst: green

117
Q

L25: Where does the Calvin Cycle happen?

A

stroma

118
Q

L25: What goes in and what comes out?

A
In:
3 RuBP
3 Co2
9 ATP
6 NADPH
Out:
3 RuBP
1 G3P
9 ADP
6 NADP+
119
Q

L25: What are the 3 phases?

A

Fixation: add CO2, enzyme RuBP
Reduction: Add phosphates, something is gaining electrons
Regeneration: Fix NADH, ATP imbalances

120
Q

L25: What is cyclic electron flow?

A

when electrons are backed up and FD goes back to PQ and creates a circuit

121
Q

L26: Diffusion vs. Osmosis

A

diffusion: movement of particles so that they spread out into avaible space
try to go to equilibrium

osmosis: Diffusion(movement of particles so that they spread out into avaible space) of water

122
Q

L26: What is an electrochemical gradient?

A

measure of the free energy available to carry out the useful work of transporting the molecule across the membrane

123
Q

L26: Hypo, hyper, iso osmotic

A

Hypoosmotic: lower solute concentration

hyperosmotic: higher solute concentration
isosmotic: equal solute concentration

124
Q

L26: Hypo, hyper, iso tonic

A

Hypotonic: cell swells

hypertonic: cell shrinks raisin
isotonic: no change in cell

125
Q

L27: Differences between active and passive transport? Energy and gradients

A

energy required: active up/with the gradient [low] –> [high]
no energy required: passive down/against the gradient [high] –> [low]

126
Q

L27: 3 types of passive transport

A

Simple diffusion – movement of small or lipophilic molecules

Osmosis – movement of water molecules

Facilitated diffusion – movement of large or charged molecules via membrane proteins

127
Q

L27: 3 types of active and what they do

A
Primary active transport: "pump"
directly uses ATP
[low]-->[high] (against gradient)
type of carrier
2 kinds (uniport and cotransport)

secondary active transport: gradients
move 2 molecules at once(antiport, symport)

electron driven transport:

128
Q

L27: 3Na+/2K+ Pump and steps

A
  1. 3 na+ bind to intracellular die of pump
  2. ATP add phosphate to pump
  3. Conformational shift (flip to outside/other side)
  4. 3 Na+ go outside
  5. 2 K+ bind to extracellular side of pump
  6. phosphate removed
  7. conformational shift (flip to inside)
  8. 2 K+ go inside
  9. repeat
129
Q

L28: Difference between endocytosis and exocytosis

A

endo: into cell
exo: out of cell

130
Q

L28: 4 different types of vesicle transport

A

phagocytosis: eat cell
pinocytosis: drink cell
receptor mediated endocytosis: picky eater in cell
receptor= bind specific molecule
exocytosis: exit/out cell

131
Q

L29: 3 stages of cell signaling

A

reception, transduction, response

132
Q

L29: 5 types of cell signaling and their characteristics

A

gap function: direction connection of 2 cell cytoplasm
very short range
very specific

cell to cell: direct contact of 2 cells
very short range and very specific

synaptic transmission: neuron releasing signal onto another cell
short/ long range
specific

paracrine: signaling to nearby cells
medium range
general

endocrine: signaling to cell far away using the blood stream
long range
general

133
Q

L29: What does a Kd tell you about a ligand receptor interaction?

A

how tightly ligand binds to receptor

134
Q

L29: Why do only certain cells respond to a signal?

A

a cell has to have the right receptor for that signal