DNA and Biotechnology Flashcards
1° Structure: Nucleic Acids
Linear sequence of nucleotides.
2° Structure: Nucleic acid (DNA)
Interactions between bases within the same molecule. In
DNA, the bases are held together by hydrogen bonds. 2°
structure is responsible for the shape of nucleic acid.
2° Structure: Nucleic Acids (RNA)RNA 2°
structure has 4 basic elements: Loops, helices, bulges,
and junctions. Loops include stem-loops (hairpin loops),
tetraloops, and psuedoknots
Nucleoside
: 5-carbon sugar + nitrogenous base. NO PHOSPHATE groups.
Nucleotide:
A nucleoside with 1 to 3 phosphate groups added.
Nucleotides in DNA contain deoxyribose; in RNA they
contain ribose. Adenine (A), Thymine (T), Guanine (G),
Cytosine (C), Uracil (U). In RNA, U replaces T, so A pairs with
U via 2 h-bonds.
Watson-Crick
Model:
Backbone of alternating sugar/phosphate groups. Always
read 5’ –> 3’. Two strands with antiparallel polarity wound
into a double helix.
B-DNA vs Z-DNA
Most DNA is B-DNA, forming a right-handed helix. Low
concentrations of Z-DNA, with a zigzag shape, may be seen
with high GC-content or high salt concentration
Oncogenes
Develop from mutations of proto-oncogenes, and
promote cell cycling. May lead to cancer.
Oncogenes = stepping on gas pedal
Tumor Suppressor
Genes
Genes:
Code for proteins that reduce cell cycling or promote
DNA repair.
Mutated Tumor Suppressor genes = cutting the brakes
Proofreading:
DNA Polymerase proofreads its work and excises
incorrectly matched bases. The daughter strand is
identified by its lack of methylation and corrected
accordingly.
What phase of the cell cycle does mismatch repair occur?
G2 phase using the genes MSH2 and MLH1
Nucleotide
Excision Repair
Fixes helix-deforming lesions of DNA such as Thymine
dimers. A cut-and-patch process. Excision Endonuclease.
Base Excision
Repair
Fixes nondeforming lesions of the DNA helix such as
cytosine deamination by removing the base, leaving
apurinic/apyrimidinic (AP) site. AP Endonuclease then
removes the damaged sequence, which can be filled in
with the correct bases.
Heterochromatin
Dark, dense, and silent
Euchromatin
Light, uncondensed, and expressed