Cloning and biotechnology chp 22 ONLY DONE 22.6 + .8 Flashcards

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1
Q

why should you take care when culturing microorganisms

A
  • risk of mutation making bacteria pathogenic
  • may be contamination with pathogenic microorganisms from environment
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2
Q

define inoculation

A
  • adding of bacteria to nutrient medium (agar or broth)
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3
Q

explain steps to inoculate broth

A
  • make suspension of bacteria to be grown
  • mix known vol of bacteria with sterile nutrient broth
  • stopper flask with cotton wool to prevent contamination
  • incubate at suitable temperature
    ^shake regularly to aerate broth and provide bacteria with oxygen
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4
Q

explain steps to inoculating agar

A
  • use sterile inoculating loop (Bunsen burner, until glow red hot)
    ^don’t let it touch surface to avoid contamination
  • dip loop in bacteria suspension
  • remove lid of Petri dish
  • apply in zig zag pattern (gently)
  • replace lid of dish
  • secure lid with tape and store upside down to avoid condensation dripping
  • incubate
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5
Q

what’s the 1st phase of growth of bacterial colonies

A
  • lag phase
    ^growing,
    ^synthesising enzymes
    ^not producing at max rate
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6
Q

what’s the 2nd phase of growth of bacterial colonies

A
  • log/exponential phase
    ^rate of reproduction at max
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7
Q

whats the 3rd phase of growth of bacterial colonies

features of

A
  • stationary phase
    ^total growth rate = 0
    ^number of cells made from binary fission = number of cells dying
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8
Q

what’s the last phase of growth of bacterial colonies

A
  • death stage
    ^reproduction almost ceased
    ^death rates of cells increasing
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9
Q

what are some limiting factors to growth of bacteria

A
  • nutrients available
  • oxygen levels
  • temperature (can denature)
  • build up of waste (raises toxicity of environment)
  • change in pH (can denature)
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10
Q

what are some examples of aseptic techniques

A
  • closing doors + windows + turning off fans
  • roll up sleeves, take jewelry off, tie up hair
  • sanitise surface with 70% alcohol
  • wash hands and forearms
  • steralise all equipment before and after
  • once equipment picked up don’t put it down until finished with
  • open bottles with pinky
  • flaming (bottle necks, inoculating loops)
  • keep lid on petri dish for as long as possible (if opening keep close to dish)
  • incubate agar unside down
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11
Q

define isolated enzymes

A

Enzymes separated from their natural environment

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12
Q

what are some advantages of using isolated enzymes instead of whole organisms

A
  • less wasteful
  • more efficient
  • more specific (no unwanted enzymes present)
  • maximises efficiency (can give optimum conditions for that enzyme)
  • less downstream processing (pure product formed so no need to purify)
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13
Q

what type of enzymes are isolated enzymes usually

A
  • extra cellular
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14
Q

why are extracellular enzymes easier to form into isolated enzymes

A
  • are secreted making them easier to isolate
  • organisms produce relatively few extracellular enzymes so easy to identify
  • tend to be much more robust
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15
Q

when would intracellular enzymes be used as isolated enzymes

A
  • bigger range of intracellular enzymes
    ^so can be more specific
    ^in this case pros > cons
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16
Q

what is an example of an intracellular isolated enzyme

A
  • penicillin amylase for converting natural penicillin into drugs which are more effective
17
Q

define immobilised enzymes

A
  • isolated enzymes attached to inert support system over which substrates passes
18
Q

what are the advantages of using immobilised enzymes

A
  • immobilised enzymes can be reused (cheaper)
  • easily separated from reactants + products so less need for downstream processing
  • more reliable (high degree of control of process)
  • greater temperature tolerance
  • ease of manipulation (properties can be altered)
19
Q

what are some disadvantages of using immobilised enzymes

A
  • reduced efficiency (process of immobilising may reduce rate)
  • higher initial cost of materials of both enzymes + bioreactor
  • more technical issues (bioreactors with immobilised are complex)
20
Q

what are the 4 types of immobilisation

A
  • adsorption
  • covalent bonding
  • entrapped in matrix
  • encapsulated
21
Q

define adsorption immobilisation

A
  • process of attachting enzyme to inert inorganic support system without use of covalent bonding
22
Q

define covalent/ioninc bonding immobilisation

A
  • covalent/ionic bonding of enzyme to inorganic carriers
23
Q

what is an example of a matrix within which enzymes can be immobilised

A
  • gelatin
  • activated carbon
24
Q

define encapsulation immobilisation

A
  • membrane entrapment in microcapsules or semi-permeable membrane
25
Q

what are the advantages of adsorption immobilisation

A
  • simple and cheap to do
  • can be used with many different processes
  • enzyme accessible to substrate
  • activity unchangedby process
26
Q

what are the disadvantages of adsorption immobilisation

A
  • enzymes can be lost from matrix relatively easily
27
Q

what are the advantages of using covalent/ionic adsorption immobilisation

A
  • cost varies (can be cheap)
  • enzymes strongly bound (unlikely to be lost)
  • enzymes accessible to substrate
  • pH and substrate conc have little effect on rate
28
Q

what are the disadvantages of using covalent/ionic adsorption immobilisation

A
  • cost varies
  • active site of enzyme may be modified in process
    ^can make it less effective
29
Q

what are some advantages of entrappment in matrix immobilisation

A
  • widely applicable to different processes
30
Q

what are some disadvantages of entrappment in matrix immobilisation

A
  • can be expensive
  • can be difficult
  • diffusion of substrate to and product from active site can slow down reaction
  • effect of entrapment on enzyme activity variable (depending on matrix)
31
Q

what are some advantages of encapsulation immobilisation

A
  • relatively simple to do
  • relatively small effect of enzyme activity
  • widely applicable to different processes
32
Q

what are some disadvantages of encapsulation immobilisation

A
  • relatively expensive
  • diffusion of substrate to and product from active site can slow reaction
33
Q

what is an example of immobilised enzymes in industry

A
  • immobilised lactase used to produce lactose free milk
    ^hydrolyses lactose to glucose and galactose