Chapter Twenty: Epigenetics Flashcards

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1
Q

three techniques to monitor regulation of gene expression

A
  1. northern
  2. microarray
  3. RT-PCR
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2
Q

techniques to monitor gene expression depend on ___

A

hybridization

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3
Q

heritable alterations in gene expression that do not involve a mutation or change in base pairing

A

epigenetics

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4
Q

the DNA sequence in genes is not the only carrier of ___

A

genetic information

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5
Q

write the definition of epigenetics

A

heritable self-perpetuating changes in gene expression not caused by base pair sequence changes

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6
Q

epigenetics usually involves modified ___, ___, or ___

A

cytosine residues, histone tails, or small RNAs

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7
Q

epigenetic factors determine whether a gene is ___ or ___

A

on or off (expressed or not)

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8
Q

phenomenon in which expression of an allele depends on the parent that transmits it

A

genomic imprinting

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9
Q

about ___ imprinted genes have been identified

A

100

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10
Q

paternal allele is not transcribed

A

paternally imprinted

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11
Q

maternal allele is not transcribed

A

maternally imprinted

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12
Q

imprinted means ___

A

silenced

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13
Q

a methyl group is added to the cytosine base in a 5’ CpG 3’ dinucleotide by DNA methyltransferase

A

DNA methylation

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14
Q

regions with a high concentration of CpG dinucleotides

A

CpG islands

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15
Q

CpG islands are usually ___ and located near a ___

A

unmethylated
promoter

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16
Q

an ___ binds to unmethylated CpG islands, the chromatin is ___ and transcription is ___

A

activator
open
activated

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17
Q

DNA methylation at CpG islands ___ gene expression

A

silences

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18
Q

repressors called ___ bind to methylated CpG islands and close the chromatin structure

A

methyl-CpG-binding proteins (meCPs)

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19
Q

cytosine methylation pattern is ___ during DNA replication, so DNA methylation is ___ throughout cell division

A

copied
maintained

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20
Q

special ___ at the replication fork methylates the newly synthesized DNA strand

A

DNMT

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21
Q

sex-specific DNA methylation mediates ___

A

imprinting

22
Q

imprinting occurs through these two mechanisms

A
  1. insulator mechanism
  2. ncRNA mechanism
23
Q

epigenetic imprints remain throughout the ___ of an animal

A

life span

24
Q

in germ cells, epigenetic imprints ___ each generation

A

reset

25
Q

during meiosis, imprints are ___ and new ones are set based on the ___ of the organism

A

erased
sex

26
Q

human ___ show imprinting

A

pedigrees

27
Q

___ syndrome occurs when a deletion in chromosome 15 comes from the father, ___ syndrome occurs when it is inherited from the mother

A

prader-wili
angelmans

28
Q

imprinting only occurs in ___

A

placental mammals

29
Q

most imprinted genes control ___

A

prenatal growth

30
Q

imprinting is ___ (100 genes identified so far)

A

rare

31
Q

all cells in multicellular organisms have the same ___

A

genes

32
Q

cell types are different because of ___ differences

A

gene expression

33
Q

determines gene expression and potential fates of a cell, often a transcription factor

A

master regulator

34
Q

cells “remember” their fate from cell generation to generation partly because histone modifications that repress transcription at master regulatory genes are ___

A

copied at the replication fork

35
Q

drosophila Cox (homebox) genes encode transcription factors that set up animals ___

A

segmented body plan

36
Q

highly compacted chromatin found in all cells

A

constitutive heterochromatin

37
Q

constitutive heterochromatin is found at ___, which are enriched in ___; important to prevent ___

A

centromeres
transposable elements
TE mobilization

38
Q

constitutive heterochromatin is also found at ___

A

telomeres

39
Q

___ transcribed from centromeres initiates heterochromatin formation

A

ncRNA

40
Q

ncRNA is converted to ___ which binds to ___

A

siRNA
argonaute (ago)

41
Q

ago recruits ___ that results in heterochromatin formation

A

histone methyltransferases

42
Q

plant heterochromatin is ___ after cell division

A

reformed

43
Q

which base gets methylated in epigenetic control

A

cytosine

44
Q

mammalian cells ___ which X chromosome was inactivated

A

remember

45
Q

when an environmentally induced trait (not caused by a base pair mutation) appears in an individual’s descendants whose DNA was not directly exposed to the environmental trigger

A

transgenerational epigenetic inheritance

46
Q

methylation marks are released during meiosis in ___ but not ___

A

animals
plants

47
Q

piRNAs transmit memories of ___

A

TE invasion

48
Q

organisms try to ___ TE mobilization to prevent mutations or chromosomal rearrangements

A

limit

49
Q

why can TEs move with a minimal effect on phenotype in humans?

A

only 1% of the human genome codes for proteins that affect phenotype

50
Q

environmentally induced trait that is displayed only in the child, or child and grandchild of an originally exposed female, or child of an exposed male

A

intergenerational epigenetic inheritance