Biochemistry Metabolism Flashcards
What is the rate determining step of Glycolysis?
Fructose-6-P –> Fructose 1,6-BP via PFK-1
Which cofactors positively regulate glycolysis?
AMP, fructose 2,6 BP
Which cofactors negatively regulate glycolysis?
ATP, citrate
Where does glycolysis occur and what is the end product?
Cytosol, pyruvate
What happens with pyruvate after glycolysis? (2 options)
Aerobic metabolism via TCA cycle and Ox-pphos in mitochondria
Anaerobic metabolism via Lactate dehydrogenase to lactate
What is the rate limiting step in gluconeogenesis with which enzyme?
Fructose 1,6-BP –> Fructose 6 P via Fructose 1,6- bisphosphatase
Negative regulators of gluconeogenesis
AMP, fructose-2,6,BP
What is the rate determining step and enzyme for TCA cycle?
Isocitrate –> alpha-ketoglutarate via Isocitrate dehydrogenase
What is the positive regulator of TCA cycle?
ADP
What negatively regulates the TCA cycle?
ATP, NADH
What is the rate-determining enzyme for glycogenesis
Glycogen synthase
What positively regulates glycogenesis?
Insulin, G6P and cortisol
What negatively regulates glycogenesis
Epinephrine, glucagon
What is the rate determining enzyme for Glycogenolysis
Glycogen phosphorylase
What positively regulates glycogenolysis
epinephrine, glucagon, AMP
What negatively regulates glycogenolysis
G6P, insulin, ATP
What is the function of the HMP shunt?
Produce NADPH
What is the rate determining enzyme of HMP shunt?
G6PD
What negatively regulates HMP shunt?
NADPH
What is the rate determining enzyme for de novo pyrmidine synthesis
Carbamoyl phosphate synthetase II
What is the rate determining enzyme of de novo purine syntesis
PRPP amidotransferase
What is the rate determining enzyme for urea cycle?
Carbamoyl phosphate synthetase I
What positively regulates urea cycle?
N-acetylglutamate and proteins
What negatively regulates fatty acid oxidation?
Malonyl-CoA
What is the rate limiting enzyme of fatty acid oxidation?
Carnitine acyltransferase I
Which two products does HMG-CoA ultimately make?
Cholesterol or ketones (beta-hydroxybutyrate)
Which step is pyruvate dehydrogenase involved in and which cofactor does it use?
Pyruvate –> Acetyl CoA; Thiamine
Which step is pyruvate kinase involved in?
PEP–> pyruvate
Which step is isocitrate dehydrogenase involved in?
Isocitrate –> alpha-KG
Which step is alpha-KG dehydrogenase involved in and what cofactor does it use?
alpha-KG–> Succinyl CoA; Thiamine
How much ATP does aerobic metabolism produce for heart and lungs using which shuttle?
32 net via malate-aspartate
How much ATP does aerobic metabolism produce for muscle using which shuttle?
30 net via G3P shuttle
What does arsenic poison due?
Causes glycolysis to produce 0 ATP
What 4 processes is NADPH used in?
Anabolic processes
Respiratory burst
Cytochrome P450 system
Glutathione reductase
Which processes is NAD+ usually used in?
Catabolic processes
What is the first committed step in glycolysis?
Glucose –> G6P (irreversible)
Which two enzymes are involved in the conversion of glucose to G6P
Hexokinase (most tissues except liver and pancreas) and Glucokinase (pancreas and liver)
Which enzyme is expressed at low glucose concentrations?
Hexokinase
Does hexokinase have a high or low Km?
low (high affinity for glucose)
Does hexokinase have a high or low Vm?
low (lower capacity)
Which enzyme mutation causes maturity-onset diabetes of the young?
Glucokinase
Which kinase responds to insulin levels?
Glucokinase
Which enzyme is inhibited by G6P?
Hexokinase
Which enzyme reactions produce ATP in glycolysis?
Phosphoglycerate kinase and pyruvate kinase
How does glucagon influence cAMP levels, FBPase-2 and PFK-2 levels?
Increase cAMP, increase FBPase-2 and decrease PFK-2
How does phosphorylation affect FBP-2ase and PFK-2
Activates FBP-ase2 and inactivates PFK-2
How does insulin influence cAMP, FBP-2ase and PFK-2 levels?
Decrease cAMP, decrease FBP-ase2 and increase PFK-2
What is the mnemonic for the 5 cofactors needed for the pyruvate dehydrogenase complex?
Tender Loving Care for Nancy
Thiamine (B1), Lipoic Acid, CoA (B5), FAD (B2), NAD (B3)
What activates PDH complex and alpha-KG complex?
increase NAD+/NADH, ADP, and Ca++
How does arsenic poisoning affect TCA?
Inhibits Lipoic acid so a-KG DH and PDH complexes cannot function (TCA cycle inhibited)
What is the clinical presentation of Arsenic poisoning?
Vomiting, rice-water stools, garlic breath
How Pyruvate dehyrdogenase deficiency inherited?
X-linked
What are the clinical findings of PDH deficiency?
neurologic defects, lactic acidosis (pyruvate gets shunted to lactate buildup bc cannot enter TCA) and increase serine alanine in infancy
What is the treatment for PDH complex deficiency?
High fat content diet or increase lysine and leucine diet (ketogenic diet)
What are the 4 products that pyruvate can be metabolized to?
Alanine (muscles, uses B6)
OAA (TCA replenisher, gluconeogenesis, uses B7)
Acetyl-CoA (TCA, uses B1, B2, B3, B5)
Lactate (uses B3)
Which cells rely on Corii cycle (pyruvate –> lactate)?
RBCs, WBCs, kidney medulla, lens, testes, cornea
Which step in TCA cycle produces GTP?
Succinyl CoA –> Succinate
What is the mnemonic for the TCA cycle?
Citrate Is Krebs Starting Substrate For Making Oxaloacetate Isocitrate alpha-Ketoglutarate Succinyl coA Succinate Fumarate Malate OAA
How much ATP does the TCA cycle produce per glucose?
10
Which complex of the electron transport chain does Rotenone inhibit?
Complex 1
Which complex of the ETC does Antinomycin inhibit?
Complex 3 (succinate dehyrdogenase)
Which complex of the ETC do Carbon monoxide and cyanide inhibit?
Complex 4
What effect do complex inhibitors of the ETC have on ATP levels and proton gradient?
decrease proton gradient and ATP synthesis
Which molecule directly inhibits ATP synthase?
Oligomycin
What is the effect of Oligomycin on ATP and proton gradient?
Increase proton gradient, decrease ATP production
What is the effect of uncoupling agents of the etc?
Increase oxygen consumption, decrease ATP production, but electron transport continues. produce heat
What are three ETC uncouplers?
2,4-Dinitrophenol (weight loss), Aspirin (fevers after OD), thermogenin in brown fat
What is the pentose phosphate pathway? (HMP shunt)
Metabolic pathway to produce NADPH
Which cells primarily use HMP shunt?
Red blood cells, liver and adrenal cortex cells, lactating mammary glands
How is NADPH generated?
Excess G6P is converted to 6-PG via G6DH and NADPH is produced
What are 3 major functions of NADPH?
Glutathione reduction (prevents oxidative damage)
Ribose synthesis for nucleotides
Cholesterol and fatty acid biosynthesis
Heinz bodies and bite cells are indicative of which malignancy?
G6PDH deficiency
How is G6PDH deficiency inherited ? What is its protective role?
Autosomal recessive, provides malarial resistance
What are the precipitating factors for hemolytic anemia in G6PDH?
recent infection, fava beans, sulfonamides, primaquine, antituberculosis drugs
How does glutathione provide fight against free radicals?
Used by glutathione peroxidase to neutralize H2O2 into 2H2O
Where does fructose metabolism occur?
Liver
What is essential fructosuria a disorder of?
Defect in fructokinase so cannot convert fructose to fructose-1-P
Which steps of fructose metabolism consume ATP?
fructokinase and triose kinase (Glyceraldehyde to G3P)
Which step of fructose metabolism consume NADH?
Glycerol to glyceraldehyde
What is the end product of fructose metaoblism?
G3P, enters glycolysis
What are the symptoms of essential fructosuria and how is it inherited?
Fructose in blood and urine; AR
What are the symptoms of fructose intolerance?
Hypoglycemia, jaundice, cirrhosis and vomiting
What is fructose intolerance a defect of
Aldolase B so cannot convert Fructose 1 P to DHAP or Glyceraldehyd
How does fructose intolerance lead to hypoglycemia?
Lowers availability of phosphate so glycogenolysis and gluconeogenesis cannot take place
What is the treatment for fructose intolerance?
Avoid foods with sucrose and fructose
What are the urine dipstick results for fructose intolerance?
negative; urine dipstick measures glucose and you don’t have enough glucose in this d/o
Describe the mnemonic FAB GUT
Fructose is to Aldolase B as Galactose is to Uridiyltransferase; defects in both lead to phosphate depletion
What is the end-product of galactose metabolism?
Glucose-1-P, enters glycogenesis or glycolysis
What are the symptoms of galactokinase deficiency
Galactose in blood and urine, infantile cataracts
How can galactokinase deficiency present?
Failure to track objects or develop social smile
When do symptoms of galactose metabolism issues develop?
When infant begins feeding (breastmilk has lactose)
Which enzyme is absent in classic galactosemia?
galactose-1-phosphate uridyltransferase?
What are the symptoms of galactosemia?
Hepatomegaly, infantile cataracts, jaundice, failure to thrive
What causes infantile cataracts in galactose metabolism disorder?
Accumulation of galactitol, which accumulates in lens
What is the treatment for galactosemia in infants?
exclude galactose and lactose from diet
Infection with which agent leads to sepsis in neonates with galactosemia?
E. Coli