Biochemistry Metabolism Flashcards
What is the rate determining step of Glycolysis?
Fructose-6-P –> Fructose 1,6-BP via PFK-1
Which cofactors positively regulate glycolysis?
AMP, fructose 2,6 BP
Which cofactors negatively regulate glycolysis?
ATP, citrate
Where does glycolysis occur and what is the end product?
Cytosol, pyruvate
What happens with pyruvate after glycolysis? (2 options)
Aerobic metabolism via TCA cycle and Ox-pphos in mitochondria
Anaerobic metabolism via Lactate dehydrogenase to lactate
What is the rate limiting step in gluconeogenesis with which enzyme?
Fructose 1,6-BP –> Fructose 6 P via Fructose 1,6- bisphosphatase
Negative regulators of gluconeogenesis
AMP, fructose-2,6,BP
What is the rate determining step and enzyme for TCA cycle?
Isocitrate –> alpha-ketoglutarate via Isocitrate dehydrogenase
What is the positive regulator of TCA cycle?
ADP
What negatively regulates the TCA cycle?
ATP, NADH
What is the rate-determining enzyme for glycogenesis
Glycogen synthase
What positively regulates glycogenesis?
Insulin, G6P and cortisol
What negatively regulates glycogenesis
Epinephrine, glucagon
What is the rate determining enzyme for Glycogenolysis
Glycogen phosphorylase
What positively regulates glycogenolysis
epinephrine, glucagon, AMP
What negatively regulates glycogenolysis
G6P, insulin, ATP
What is the function of the HMP shunt?
Produce NADPH
What is the rate determining enzyme of HMP shunt?
G6PD
What negatively regulates HMP shunt?
NADPH
What is the rate determining enzyme for de novo pyrmidine synthesis
Carbamoyl phosphate synthetase II
What is the rate determining enzyme of de novo purine syntesis
PRPP amidotransferase
What is the rate determining enzyme for urea cycle?
Carbamoyl phosphate synthetase I
What positively regulates urea cycle?
N-acetylglutamate and proteins
What negatively regulates fatty acid oxidation?
Malonyl-CoA
What is the rate limiting enzyme of fatty acid oxidation?
Carnitine acyltransferase I
Which two products does HMG-CoA ultimately make?
Cholesterol or ketones (beta-hydroxybutyrate)
Which step is pyruvate dehydrogenase involved in and which cofactor does it use?
Pyruvate –> Acetyl CoA; Thiamine
Which step is pyruvate kinase involved in?
PEP–> pyruvate
Which step is isocitrate dehydrogenase involved in?
Isocitrate –> alpha-KG
Which step is alpha-KG dehydrogenase involved in and what cofactor does it use?
alpha-KG–> Succinyl CoA; Thiamine
How much ATP does aerobic metabolism produce for heart and lungs using which shuttle?
32 net via malate-aspartate
How much ATP does aerobic metabolism produce for muscle using which shuttle?
30 net via G3P shuttle
What does arsenic poison due?
Causes glycolysis to produce 0 ATP
What 4 processes is NADPH used in?
Anabolic processes
Respiratory burst
Cytochrome P450 system
Glutathione reductase
Which processes is NAD+ usually used in?
Catabolic processes
What is the first committed step in glycolysis?
Glucose –> G6P (irreversible)
Which two enzymes are involved in the conversion of glucose to G6P
Hexokinase (most tissues except liver and pancreas) and Glucokinase (pancreas and liver)
Which enzyme is expressed at low glucose concentrations?
Hexokinase
Does hexokinase have a high or low Km?
low (high affinity for glucose)
Does hexokinase have a high or low Vm?
low (lower capacity)
Which enzyme mutation causes maturity-onset diabetes of the young?
Glucokinase
Which kinase responds to insulin levels?
Glucokinase
Which enzyme is inhibited by G6P?
Hexokinase
Which enzyme reactions produce ATP in glycolysis?
Phosphoglycerate kinase and pyruvate kinase
How does glucagon influence cAMP levels, FBPase-2 and PFK-2 levels?
Increase cAMP, increase FBPase-2 and decrease PFK-2
How does phosphorylation affect FBP-2ase and PFK-2
Activates FBP-ase2 and inactivates PFK-2
How does insulin influence cAMP, FBP-2ase and PFK-2 levels?
Decrease cAMP, decrease FBP-ase2 and increase PFK-2
What is the mnemonic for the 5 cofactors needed for the pyruvate dehydrogenase complex?
Tender Loving Care for Nancy
Thiamine (B1), Lipoic Acid, CoA (B5), FAD (B2), NAD (B3)
What activates PDH complex and alpha-KG complex?
increase NAD+/NADH, ADP, and Ca++
How does arsenic poisoning affect TCA?
Inhibits Lipoic acid so a-KG DH and PDH complexes cannot function (TCA cycle inhibited)
What is the clinical presentation of Arsenic poisoning?
Vomiting, rice-water stools, garlic breath
How Pyruvate dehyrdogenase deficiency inherited?
X-linked
What are the clinical findings of PDH deficiency?
neurologic defects, lactic acidosis (pyruvate gets shunted to lactate buildup bc cannot enter TCA) and increase serine alanine in infancy
What is the treatment for PDH complex deficiency?
High fat content diet or increase lysine and leucine diet (ketogenic diet)
What are the 4 products that pyruvate can be metabolized to?
Alanine (muscles, uses B6)
OAA (TCA replenisher, gluconeogenesis, uses B7)
Acetyl-CoA (TCA, uses B1, B2, B3, B5)
Lactate (uses B3)
Which cells rely on Corii cycle (pyruvate –> lactate)?
RBCs, WBCs, kidney medulla, lens, testes, cornea
Which step in TCA cycle produces GTP?
Succinyl CoA –> Succinate
What is the mnemonic for the TCA cycle?
Citrate Is Krebs Starting Substrate For Making Oxaloacetate Isocitrate alpha-Ketoglutarate Succinyl coA Succinate Fumarate Malate OAA
How much ATP does the TCA cycle produce per glucose?
10
Which complex of the electron transport chain does Rotenone inhibit?
Complex 1
Which complex of the ETC does Antinomycin inhibit?
Complex 3 (succinate dehyrdogenase)
Which complex of the ETC do Carbon monoxide and cyanide inhibit?
Complex 4
What effect do complex inhibitors of the ETC have on ATP levels and proton gradient?
decrease proton gradient and ATP synthesis
Which molecule directly inhibits ATP synthase?
Oligomycin
What is the effect of Oligomycin on ATP and proton gradient?
Increase proton gradient, decrease ATP production
What is the effect of uncoupling agents of the etc?
Increase oxygen consumption, decrease ATP production, but electron transport continues. produce heat
What are three ETC uncouplers?
2,4-Dinitrophenol (weight loss), Aspirin (fevers after OD), thermogenin in brown fat
What is the pentose phosphate pathway? (HMP shunt)
Metabolic pathway to produce NADPH
Which cells primarily use HMP shunt?
Red blood cells, liver and adrenal cortex cells, lactating mammary glands
How is NADPH generated?
Excess G6P is converted to 6-PG via G6DH and NADPH is produced
What are 3 major functions of NADPH?
Glutathione reduction (prevents oxidative damage)
Ribose synthesis for nucleotides
Cholesterol and fatty acid biosynthesis
Heinz bodies and bite cells are indicative of which malignancy?
G6PDH deficiency
How is G6PDH deficiency inherited ? What is its protective role?
Autosomal recessive, provides malarial resistance
What are the precipitating factors for hemolytic anemia in G6PDH?
recent infection, fava beans, sulfonamides, primaquine, antituberculosis drugs
How does glutathione provide fight against free radicals?
Used by glutathione peroxidase to neutralize H2O2 into 2H2O
Where does fructose metabolism occur?
Liver
What is essential fructosuria a disorder of?
Defect in fructokinase so cannot convert fructose to fructose-1-P
Which steps of fructose metabolism consume ATP?
fructokinase and triose kinase (Glyceraldehyde to G3P)
Which step of fructose metabolism consume NADH?
Glycerol to glyceraldehyde
What is the end product of fructose metaoblism?
G3P, enters glycolysis
What are the symptoms of essential fructosuria and how is it inherited?
Fructose in blood and urine; AR
What are the symptoms of fructose intolerance?
Hypoglycemia, jaundice, cirrhosis and vomiting
What is fructose intolerance a defect of
Aldolase B so cannot convert Fructose 1 P to DHAP or Glyceraldehyd
How does fructose intolerance lead to hypoglycemia?
Lowers availability of phosphate so glycogenolysis and gluconeogenesis cannot take place
What is the treatment for fructose intolerance?
Avoid foods with sucrose and fructose
What are the urine dipstick results for fructose intolerance?
negative; urine dipstick measures glucose and you don’t have enough glucose in this d/o
Describe the mnemonic FAB GUT
Fructose is to Aldolase B as Galactose is to Uridiyltransferase; defects in both lead to phosphate depletion
What is the end-product of galactose metabolism?
Glucose-1-P, enters glycogenesis or glycolysis
What are the symptoms of galactokinase deficiency
Galactose in blood and urine, infantile cataracts
How can galactokinase deficiency present?
Failure to track objects or develop social smile
When do symptoms of galactose metabolism issues develop?
When infant begins feeding (breastmilk has lactose)
Which enzyme is absent in classic galactosemia?
galactose-1-phosphate uridyltransferase?
What are the symptoms of galactosemia?
Hepatomegaly, infantile cataracts, jaundice, failure to thrive
What causes infantile cataracts in galactose metabolism disorder?
Accumulation of galactitol, which accumulates in lens
What is the treatment for galactosemia in infants?
exclude galactose and lactose from diet
Infection with which agent leads to sepsis in neonates with galactosemia?
E. Coli
Which enzyme converts Glucose to Sorbitol?
Aldose reductase (with NADPH)
What care sorbitol accumulation in cells cause?
Osmotic damage (cataracts, peripheral neuropathy, retinopathy)
Which enzyme converts sorbitol to fructose?
Sorbitol dehydrogenase
Which organs contain both aldose reductase and sorbitol dehydrogenase?
Liver, ovaries and seminal vesicles
Which organs only contain Aldose reductase?
Schwann cells, retina, kidneys and lens
What are the 10 essential amino acids? (PVT TIM HALL)
Phenylalanine Valine Threonine Tryptophan Isoleucine Methionine Histidine Arginine Leucine Lysine
Which amino acids are ketogenic?
Leucine and Lysine
Which amino acids are glucogenic?
Histidine, Valine, Methionine
What charge do acidic amino acids carry at body pH?
negative
Which two amino acids primarily compose histones?
Arginine and LYsine
Which two amino acids are essential during periods of growth?
Arginine and Histidine
What are the components of the urea cycle? (Orange Cars Citrus Asparagus Are Fun Artsy Urinators)
Ornithine + Carbamoyl phosphate –> Citrulline + Aspartate –> Arginosuccinate–> Fumarate –> Arginine –>Urea
What is the function of urea cycle?
Convert excess NH3 from protein metabolism to urea and excrete in urine
What does a defect in any step of the urea cycle lead to?
Hyperammonemia (elevated NH3 in blood)
What are the symptoms of hyperammonemia?
Asterixis, slurring of speech, somnolence, vomiting, cerebral edema, blurring of vision
Where is carbamoyl phosphate synthetase I found?
Mitochondria of liver
What is the Cahill cycle?
Conversion of Glucose to Ammonia (Alanine) in muscle, and Alanine (NH3) to glucose in liver
What is the consequence of hyperammonemia on metabolism?
Overactivity of Cahill cycle uses up alpha-ketoglutarate leading to inhibition of TCA cycle
What is lactulose used for and how does it function?
Decreases ammonia levels by acidifying GI tract and trapping NH4+ for excretion
What are 6 primary treatments for hyperammonemia?
Lactulose, Rifaximin, Benzoate, Phenylacetate, Phenylbutyrate
What is the function of Rifaximin in lowering ammonia levels?
Decreases colonic ammoniagenic bacteria
How do benzoate, phenylacetate and phenylbutyrate function to decrease ammonia?
bind to NH4+ and lead to excretion
How do N-acetylglutamate synthase deficiency and carbamoyl phosphate synthease I deficiency present in neonates?
Hyperammonemia–> poor control of respiration, body temperature, developmental delay, intellectual disability
How is ornithine transcarbamylase deficiency inherited?
XLR
How does ornithine transcarbamylase deficiency present?
elevated orotic acid in blood and urine, decrease BUN, symptoms of hyperammonemia (asterixis, slurring of speech, somnolence, vomiting, cerebral edema)
Which amino acid forms Heme?
Glycine (+B6)
Which amino acid forms NAD+/NADP+
Tryptophan (+B2, B6)
Which amino acid forms GABA and Glutathione?
Glutamate (+B6 for GABA)
Which amino acid forms Creatine, Urea and Nitric Oxide?
Arginine
Which amino acid forms Dopamine, NE, E, Tyrosine, Melanin?
Phenylalanine
Which enzyme is deficient in autosomal recessive Phenylketonuria?
Phenylalanine hydroxylase
Which amino acid accumulates in PKU?
Phenylalanine
What is the key clinical presentation of a baby with PKU?
MUSTY BODY ODOR, pale skin, eczema, seizures, growth retardation, intellectual disability
What is the treatment for PKU?
Avoid aspartame and phenylalanine, increase Tyrosine in diet and BH4 supplementation
If a mother has PKU how does neonate present?
microcephaly, intellectual disability, cardiac defects, growth retardation
Which enzyme is deficient in maple syrup urine disease?
branched-chain alpha-ketoacid dehydrogenase (or B1)
What is the defect in maple syrup urine disease?
Blocked degradation of branched amino acids Isoleucine, Leucine, Valine
List the branched amino acids (I Love Vermont Maple Syrup)
Isoleucine, Leucine, Valine
How does maple syrup urine disease present?
vomiting, poor feeding, urine smells like burnt sugar/maple syrup
What are the long-term consequences of untreated maple syrup urine disease?
Intellectual disability, severe CNS defects, death
How is maple syrup urine disease treated?
Avoid Isoleucine, Leucine, Valine in diet; B1 supplementation
What is Alkaptonuria?
Autosomal Recessive defect in Tyrosine metabolism to Fumarate
Which enzyme is deficient in Alkaptonuria and what accumulates in tissues?
Homogentisate oxidase is deficient; pigment-forming homogentisic acid accumulates in connective tissue
Clinical presentation of Alkaptonuria
Bluish-black pigments on sclerae (ochronosis) and connective tissue; urine turns black on prolonged exposure to air
What is a rheumatic consequence of alkaptonuria?
Debilitating arthralgias (homogentisic acid is toxic to cartilage); osteoarthropathy
How is homocysteinuria inherited?
Autosomal Recessive
Which enzymes may be deficient/defective in Homocysteinuria?
Cystathione synthase or Methionine Synthase
What is the treatment for Cystathione synthase Homocysteinuria?
Lower methionine intake, increase cysteine intake, increase B12 and folate intake
What is the treatment for methionine synthase deficient homocysteinuria
increase methionine in diet
What are the clinical findings of homocysteinuria?
Excess homocysteine in urine, intellectual disability, Marfanoid habitus, kyphosis, thrombosis, atherosclerosis, and lens subluxation
Which amino acids are lost in urine of patients suffering from cysteinuria?
Cystine, Ornithine, Lyscine, Arginine (COLA)
What is the treatment for cysteinuria
Alakanization of urine (Acetazolamide, postassium citrate) and chelating agents (penicillamine)
Which second messenger system does Insulin use to stimulate glycogenesis?
Tyrosine Kinase to activate Protein phosphatase to activate glycogen synthase
Which second messenger system do Glucagon and epinephrine (Beta receptor) use to activate glycogenolysis?
Adenylate cyclase –> cAMP–> PKA –> glycogen phosphorylase –> glycogenolysis
Which second messenger does epinephrine on alpha receptors (liver) use to activate glycogenolysis?
Calcium
Is glycogen synthase activated or inactivated by phosphorylation?
inactivated
Is glycogen phosphorylase activated or inactivated by phosphorylation?
Activated
Which method identifies glycogen in cells (Glycogen storage dz dx)?
Periodic acid-Schiff stain
What is Glycogen Storage Disease Type I?
Von Gierke’s disease
Which enzyme is deficient in Von Gierke’s (Type I)?
Glucose-6-phosphatase
What are the findings in Von Gierke’s
Severe fasting hypoglycemia, gout (increased uric acid), increased triglycerides, hepatomegaly and increased glycogen in liver
What is the treatment for Von Gierke’s
glucose and cornstarch supplementation, avoidance of fructose and galactose
Which enzyme is deficient in Pompe disease (Type II glycogen storage disorder)?
alpha-1,4 glucosidase in lysosomes
What are the clinical findings of Pompe disease?
Cardiomegaly, hypertrophic cardiomyopathy, exercise intolerance, early death
What enzyme storage disease is Cori?
Type III
Which enzyme is defective in Cori disease?
Debranching enzyme (alpha 1,6 glucosidase)
What are the findings of Cori disease?
Normal blood lactate, gluconeogenesis intact; milder fasting hypoglycemia, dextrin-like structures in cytosol
Which type of glycogen storage disease is McArdle?
Type V
Which enzyme is affected in McArdle disease?
Glycogen phosphorylase
What are the clinical findings in McArdle disease?
Muscle cramps, myoglobinuria with strenuous exercise, arrhythmia from electrolyte abnormalities
Name the 4 Glycogen Storage diseases
Von Gierkes, Pompe, McArdle and Cori
Name the 6 Sphingolipidoses Lysosomal Storage Diseases
Gaucher, Fabry, Niemann-Pick, Tay-Sachs, Krabbe and Metacrhomic Leukodystrophy
Which enzyme is defective in Gaucher disease?
Glucocerebrosidase
What are the clinical findings of Gaucher disease
Jaundice, hepatosplenomegaly, aseptic necrosis of femur, pancytopenia, osteoporosis
What are gaucher cells on histology?
Lipid laden macrophages (crumpled tissue appearance)
How is Gaucher disease inherited
Autosomal recessive
What is the enzyme deficiency in Krabbe disease?
Galactocerebrosidase
Which molecules accumulate in Krabbe disease?
Galactocerebroside, psychosine
Clinical findings of Krabbe disease
Peripheral neuropathy, optic atrophy, globoid cells, developmental delay
How is Krabbe disease inherited
Autosomal recessive
How is Tay Sachs disease inherited?
Autosomal Recessive
Which enzyme is deficient in Tay Sachs disease?
Hexosaminidase A
Which substance accumulates in Tay Sachs disease?
GM2 Ganglioside
What are presenting symptoms of Tay Sachs disease?
Developmental delay, progressive neurodegeneration, “cherry red spot” on macula, hepatosplenomegaly
What do you see on histology of Tay Sachs
Lysosomes with onion skin
How is Metachromatic Leukodystrophy inherited
Autosomal Recessive
What are the clinical findings of Methachromatic leukodystrophy?
Ataxia, central and peripheral demyelination, dementia
Which enzyme is deficient in Methachromatic Leukodystrophy
Arylsulfatase A
Which component builds up in Metachromatic Leukodystrophy?
Cerebroside Sulfate
members of Ashkenazi Jewish population are at risk of which lysosomal disorders?
Gaucher, Tay-Sachs, Niemann-Pick
Which enzyme is deficient in Niemann-Picks disease?
Sphingomyelinase
Which substance builds up in Niemann-Pick
Sphingomyelin
Clinical findings of Niemann-Pick
Progressive neurodegeneration, foam cells, hepatosplenomegaly, “cherry red” spot on macula
How is Fabry disease inherited
XLR
Which enzyme is deficient in Fabry disease?
alpha-galactosidase A
Which substance builds up in Fabry disease?
Ceramide Trihexoside
Clinical findings of Fabry
Peripheral neuropathy, angiokeratomas, hypohidrosis (no sweating)
Later findings of Fabry
Cardiovascular disease, renal failure
Name the two mucopolysaccharidoses Lysosomal storage disease
Hunter and Hurler
Which enzyme is defective in Hurler
alpha-L-iduronidase
Which substances build up in Hurler
Heparan sulfate, dermatan sulfate
Cllinical findings of Hurler
Developmental delay, corneal clouding, gargoylism, hepatosplenomegaly, airway obstruction
Clinical findings of Hunter
Mild Hurler and aggressive behavior (no corneal clouding)
Defective enzyme in Hurler
Iduronate Sulfatase
Which substances build up in Hunter
Dermatan sulfate, Heparan Sulfate
How is Hunter inherited
XLR
How is citrate transported from mitochondria to cytosol?
Citrate shuttle
Which molecule is required for fatty acid synthesis in the cytosol?
Citrate
How are fatty acids brought into the mitochondria for degradation?
Carnitine shuttle
What are the symptoms of carnitine deficiency?
Fatty acid accumulation in cytosol, weakness, hypotonia, hypoketotic hypoglycemia
What is the product of beta-oxidation in the mitochondria?
Acetyl-CoA, used for TCA cycle and ketone bodiess
A fasting infant or child that presents with vomiting, lethargy, seizures, coma and liver dysfunction and has hypoketotic hypoglycemia likely is deficient in which enzyme?
medium-chain acyl-CoA dehydrogenase
What’s a key feature of ketoacidosis (accumulation of ketones in blood)?
Breath with fruity odor
Which ketone can urine test not detect?
beta-hydroxybutyrate (can detect acetoacetate)
How does alchoholism lead to ketoacidosis?
Buildup of NADH shunts OAA to malate, which builds up Acetyl-CoA, shunting to favor ketone generation
Why can RBCs not use ketones?
They lack mitochondria
How soon after starvation does the body run out of its glycogen store?
12-18 hours
After glycogenolysis is used up, how does body maintain glucose levels in state of starvation >24 hours?
Hepatic gluconeogenesis from lactate and alanine and adipose tissue glycerl and propionyl-coA
After 3 days of starvation, what is the primary source of energy?
Ketone bodies, eventual protein breakdown and eventual death
What are the four functions of cholesterol?
- Maintain cell membrane integrity 2. Synthesize bile acid 3. Synthesize steroids 4. Synthesize Vitamin D
What is the rate-limiting step of cholesterol synthesis?
HMC-CoA reductase (induced by insulin)
What are lipoproteins?
Transport molecules composed of varying amounts of cholesterol, TGs, phospholipids
What are the two functions of chylomicrons?
Deliver dietary triglycerides to peripheral tissue and cholesterol to liver
What is function of VLDL?
Deliver hepatic triglycerides to peripheral tissues
What is the function of IDL?
Deliver TGs and cholesterol to liver
What is the function of LDL? How is to formed?
Deliver hepatic cholesterol to peripheral tissues. Formed by hepatic modification of IDL
What is the function of HDL?
Delivers cholesterol from peripheral tissues to liver, storage for apolipoproteins C and E (needed for chylomicron and VLDL metabolism); secreted by liver and intestine
Why is it good to sip a glass of wine at dinner?
Increases HDL synthesis
Which enzymes are deficient in Familal Hyperchylomicronemia?
Lipoprotein lipase or ApoCII
Which lipids are elevated in Type I dyslipidemia (hyperchylomicronemia)?
Chylomicrons, TG and cholesterol
Clinical findings of hyperchylomicronemia?
Pancreatitis, hepatosplenomegaly, and eruptive/pruritive xanthomas!!!
Creamy supernatant in blood draw
How is hyperchylomicronemia inherited
AR
What is Type IIa familial dyslipidemia?
Familial hypercholesterolemia
How is Familial Hypercholesterolemia inherited?
AD
Which enzyme is defective or absent in familial hypercholesterolemia?
LDL Receptor
Which lipids are elevated in familal hypercholesterolemia?
LDL, cholesterol
What are the three major findings and risks of patients with Familial Hypercholesterolemia?
Accelerated atherosclerosis (MI by 20s), corneal arcus (blue/grey ring around cornea), tendon (Achilles) xanthomas
What is type IV familial dyslipidemia?
Hypertriglyceridemia
How is Familial Triglyceridemia inherited
AD
What is the pathogenesis of Hypertriglyceridemia?
hepatic overproduction of VLDL
Which lipids are increased in blood in Hypertriglyceridemia?
VLDL, TG
How would a patient with hyper triglyceridemia likely present?
Triglycerides > 1000mg/dL; acute pancreatitis
The Ras pathway uses ATP or GTP
GTP
Where are medium chain fatty acids oxidized
Mitochondria
Where are very long chain fatty acids oxidized
Peroxisomes