Biochem 3 USMLE Flashcards
NADPH is a procatabolicduct of this pathway
HMP shunt
NAD+ is generally used in _______ processes to carry reducing equivalents away as NADH
catabolic
NADPH is used in _____ processes (steroid and fatty acid synthesis) as a supply of reducing equivalents
anabolic
NADPH is used in these 3 ways:
1) anabolic processes
2) respiratory burst
3) P-450
where is hexokinase found
throughout the body
where is glucokinase found
liver
mneu: gLucokinase in Liver
describe the Km and Vmax of glucokinase in comparison to hexokinase
glucokinase has a lower affinity [higer Km] but higher capacity [ higher Vmax]
which one hexokinase or glucokinase is feedback inhibited by G6P
hexokinase
which one hexokinase or glucokinase phosphorylates excess glucose (e.g., after a meal) to sequester it in the liver as G6P
glucokinase
give the irreversible enzymes in glycolysis regulation
hexokinase/glucokinase
phosphofructokinase-1 (RLS)
pyrovate kinase
pyruvate dehydroginase
hexokinase/glucokinase converts D-glucose into what?
what is this inhibited by?
Glucose-6-P
Glucose-6-P(inh by product)
phosphofructokinase-1 (RLS) converts fructose 6-phosphate into what?
what is it inhibited by?
stimulated by?
Fructose-1,6-BP
inh by: ATP, citrate
stim by: AMP,Fructose-2,6-BP
pyrovate kinase converts phosphoenolpyruvate into what?
what is it inhibited by?
stimulated by?
pyruvate
stim: fructose-1,6-BP
inh: ATP, alanine
pyruvate dehydroginase converts pyuvate into what?
what is it inhibited by?
Acetyl CoA
inh: ATP, NADH
Acetyl-CoA
Glycolyc enzyme deficiencies such as hexokinase, glucose phosphate isomerase, aldolase, triosephosphate isomerase, phosphate glycerate kinase, enolase, and pyruvate kinase deficiencies are associated with what condition
hemolytic anemia
why do glycolytic enzyme deficiencies result in hemolytic anemia
RBCs metabolize glucose anaerobically (no mitochondria) and thus depend solely on glycolysis
The pyruvate dehydrogenase complex contains 3 enzymes that require 5 cofactors. What are these cofactors.
1) pyrophosphate (B1, thyamine; TTP)
2) FAD (B2, riboflavin)
3) NAD (B3, niacin)
4) CoA (B5, pantothenate)
5. Lipoic acid
Pyruvate dehydrogenase complex is similar to what other complex (same cofactors, similar substrate and action)
alpha ketoglutarate
give thee pyruvate dehydrogenate reaction.
pyruvate + NAD+ + CoA
-> acetyl CoA + CO2 + NADH
pyruvate dehydrogenase complex is activated by exercise because it increases these three things
NAD+/NADH ratio
ADP
Ca++
pyruvate dehydrogenase deficiency causes a backup of substrate which is?
pyruvate and alanine
pyruvate dehydrogenase deficiency results in this
lactic acidosis
pyruvate dehydrogenase deficiency is often seen in alcoholics due to a deficiency of this vitamen
B1
someone with a pyruvate dehydrogenase deficiency may present with this deficit
neurologic
what is the tx for pyruvate dehydrogenase deficiency
increase intake of ketogenic nutrients (e.g., high fat content or high lysine and leucine)
name the only purely ketogenic amino acids
lysine and leucine
how many ATP equivalents are needed to generate glucose from pyruvate
6
this AA serves as a carrier of amino groups form mm to liver
alanine
this can be used to replenish TCA cycle or in gluconeogenesis
oxaloacetate
This cycle transfers excess reducing equivalents from RBCs and mm to liver, allowing muscle to funcction anaerobically (net 2 ATP)
cori cycle
TCA cycle enzymes
Citrate Isocitrate alpha-Ketogluterate Succinyl-CoA Succinate Fumarate Malate Oxaloacetate
mneu: Can I Keep Selling Sex For Money, Officer?
What does the TCA cycle produce per Acetyl-CoA?
how much do we multiply these numbers by if we are dealing with glucose?
3NADH, 1FADH2 2CO2 1GTP 12 ATP
2x w/ glucose
in the electron transport cha in 1 NADH gives how many ATP
3
in the electron transport cha in 1 FADH gives how many ATP
2
name 4 electron transport inhibitors that directly inhibit electron transport, causing a decrease of proton gradient and block ATP synthesis
rotenone, antimycin A, CN-, CO
This ATPase inhibitor directly inhibits mitochondrial ATPase, causing an increase of proton gradient, but no ATP is produceed because electron transport stops
oligomycin
Uncoupling agents like this increase the permeability of the membrane, causing a decrease of proton gradient and increase O2 consumption. ATP synthesis stops. Electron transport continues.
2,4 DNP
irreversible enzymes in gluconeogenesis
pyruvate carboxylase
PEP carboxykinase
Fructose-1,6-biphosphatase
Glucose-6-phosphate
mneu: Pathway Produces Fresh Glucose
pyruvate carboxylase is found here and converts this to this
It requires this
& is activated by this
mitochondria
pyruvate ->oxaloacetate
biotin, ATP
Acetyl-CoA
PEP carboxykinase is found here and converts this to this
It requires this
cytosol
oxaloacetate
->phosphoenolpyruvate
GTP
Fructose-1,6-biphosphatase is found here and converts this to this.
cytosol
fructose-1,6 bisphosphate
->fructose-6-P
where does gluconeogenesis occur
liver, kidney, intestinal epithelium
note: mm cannot participate in gluconeogenesis
deficiency of key gluconeogenic enzymes results in this
hypoglycemia
this dz is caused by a lack of glucose 6 phospatase in the liver
Von Gierke’s
This pathway produces ribose-5-P for nucleotide synthesis
and produces NADPH from NADP+ for fatty acid and steroid biosynthesis and for maintaining reduced glutathione inside RBCs
Pentose Phosphate Pathway (HMP shunt)
All pentose Phosphate Pathway (HMP shunt) reactions occur here
cytoplasm
Is ATP used or produced in Pentose Phosphate Pathway (HMP shunt)
no
give sites of Pentose Phosphate Pathway (HMP shunt)
all sites of fatty acid or steroid synthesis (e.g., lactating mammary glands, liver, adrenal cortex
this is the rate-limiting enzyme in HMP shunt (which yields NADPH)
G6PD
NADPH is necessary to keep this reduced, which in turn detoxifies free radicals and peroxides
glutathione
decreased NADPH in RBCs lead to this due to poor RBC defense against oxidizing agents (fava beans, sulfonamides, primaquine) and antituberculosis drugs
hemolytic anemia
G6PD deficiency is more prevelent amun this racial group
blacks
this sign of G6PD deficiency describes when hemoglobin precipitates within RBCs
Heinz bodies
G6PD deficiency has this inheritance
x-linked recessive
This is a hereditary deficiency of aldolase B (recessive) Fructose-1-phosphate accumulates causing a decrease in available phosphate, which results in inhibition of glycogenolysis and gluconeogenesis.
Symptoms include hypoglycemia,jaundice, cirrhosis, vomiting
fructose intolerance
what is the tx for fructose intolerance
decrease intake of both fructose and sucrose (glucose + fructose)
this d/o involves a defect in fructokinases and is a benign, asymptomatic condition.
Symptoms: fructose appears in blood and urine.
essential fructosuria
essential fructosuria is a deficiency in this enzyme
fructokinase
fructose intolerance is a deficiency in this enzyme
aldolase B
This d/o is an absense of galactose-1-phosphate uridyltransferase. It is autosomal recessive. Damage is caused by accumulation of toxic substances (including galactitol) rather than absense of an essential compound.
Symptoms: cataracts, hepatosplenomegaly, mental retardation
galactosemia
tx of galactosemia
exclude galactose and lactose (galactose + glucose) from diet
this enzyme deficiency causes galactosemia and galactosuria, galactosuria, galactitol accumulation if galactose is present in ddiet.
galactokinase deficiency
this is an age dependent or hereditary intolerance to dairy often seen in blacks and asians. Symptoms include bloating, cramps and osmotic diarrhea.
Tx includes avoiding milk or adding lactase pills to diet
lactase deficiency
give the ketogenic essential amino acids
leucine, lysine
All essential amino acids: PriVaTe TIM HALL
give the glucogenic/ketogenic essential amino acids
Ile, Phe, Trp
All essential amino acids: PriVaTe TIM HALL
give the glucogenic essential amino acids
Met, Thr,Val, Arg, His
All essential amino acids: PriVaTe TIM HALL
which 2 AA are required during periods of growth
Arg
His
what are the acidic amino acids
Asp, Glu
mneu: Asp=aspartic ACID, Glu=glutamic ACID
At body pH (7.4) acidic amino acids (Asp, Glu)are _____ charged
negatively
what are the basic amino acids
arg, lys, his
At body pH (7.4) basic amino acids (Arg, lys)are _____ charged, but _____ has no net charge
positively
his
arg and lys have an extra _____ group
NH3
the MOST basic amino acid
arginine
thise 2 AA are found in high amounds in histones, which bind to negatively charged DNA
arg, lys
this cycle degrades amino acids into amino groups. It accounts for 90% of the nitrogen in the urine.
urea cycle
urea cycle occurs in this organ
liver
in what part of the cell does the urea cycle occur
carbamoyl phosphate incorporation occurs in the mitochondria; the remaining steps occur in the cytosol
urea cycle image p. 94
ornithine, Carbamoyl phosphate, Citrulline, Aspartate, Argininosuccinate, Fumarate, Arginine, urea
mneu: Ordinarily, Careless Crappers Are Also Frivolous About Urination