RNA Synthesis Flashcards

1
Q

Which is the biggest and smallest chromosome in the karyotype?

A

1= biggest and 22= smallest

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2
Q

What protects the ends of the chromosomes?

A

Telomere

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3
Q

What is the definition of a gene?

A

Unit of hereditary, or a DNA segment containing instructions for making a particular product

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4
Q

Why is the promoter region important?

A

Turns the gene on/off

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5
Q

Which of introns/Exons is expressed?

A

Exons are Expressed (remember the E’s)

Introns are spliced out

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6
Q

Where would you find an untranslated region (UTR)?

A

Part of the first and last exon

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7
Q

What is transcription? (General overview)

A

Synthesis of mRNA from DNA

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8
Q

What is translation? (General overview)

A

Nucleic acid ->protein

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9
Q

What genes do RNA polymerase 1 transcribe?

A

Most ribosomal RNA (rRNA)

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10
Q

What genes do RNA polymerase 2 transcribe?

A

Protein coding, miRNA and non coding RNA

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11
Q

What genes do RNA polymerase 3 transcribe?

A

tRNA, 5s rRNA and other small RNAs

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12
Q

How does the cell respond so quickly to changes in its environment?

A

Lots of polymerases can work simultaneously on the gene to make lots of copies of the gene

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13
Q

What molecules do you need for RNA synthesis?

A
  • DNA template
  • RNA polymerase 2
  • ribonucleotide
  • buffers
  • transcription factors
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14
Q

What is a transcription factor?

A

Proteins required to initiate or regulate transcription in eukaryotes

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15
Q

How do transcription factors work?

A
  • TATA box (promoter) recognised by the TBP subunit or TFIID
  • other transcription factors bind then RNA polymerase2 assembles at the promoter forming the transcription initiation complex
  • TFIIH (helicase) pulls apart the helix and phosphorylates RNA polymerase 2
  • phosphorylated RNA polymerase 2 is released from the complex and begins transcription
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16
Q

What does TBP stand for?

A

TATA binding protein

17
Q

Why is there a 5’ UTR?

A

Regulation of translation

18
Q

Why is there a 3’ UTR?

A

MRNA stability and miRNA binding

19
Q

What are the three steps in RNA processing?

A

Capping, polyadenylation and splicing

20
Q

What is capping and how does it work?

A

5’ end modification.

Forms a 5’-5’ triphosphate bridge and is methylated at the 7 position

21
Q

What does capping do?

A

Allows for co-transcriptional modification
can stimulate splicing
Used for the recognition of mRNA by the translation machinery in the cytoplasm of the cell

22
Q

What is polyadenylation and how does it work?

A

At some point there is a cleavage (joining) signal. Then an adenine tail is added by poly (A) polymerase

23
Q

What is the point of capping and polyadenylation?

A

Stability
Allows for the transport to the cytoplasm
And increases the integrity prior to translation

24
Q

How many introns are in one gene?

A

7-9

25
Q

What is the size of an intron?

A

<100->700,000 nucleotides (median 1800 nucleotides)

26
Q

How many nucleotides does an exon have on average?

A

123 nucleotides

27
Q

What are the steps of splicing?

A
  • GU and pyramiding rich region get recognised by proteins and they undergo splicing
  • ends join up
  • then the 3’ end gets cut and the two Exons join up
28
Q

Why do introns exist?

A

Alternative splicing - allows you to select different Exons to make up your mature proteins

Means you can make up many more proteins with less genes

29
Q

What do you need to export the RNA from the nucleus?

A

Cap binding complex (CBC)

Transcription-coupled export complex (TREX)
Exon junction complex

30
Q

Give some examples of where alternative splicing takes place

A

Alternative promoters (eg myosin)

Alternative polyadenylation in ubiquitously expressed genes