Micro Ex 2: Medias & Metabolism Flashcards
What are the 2 types of medias?
selective & differentiate
selective means
to choose
differentiate means
to compare
What are the 3 types of Hemolysis?
beta-hemolysis, alpha-hemolysis & gamma-hemolysis
define beta-hemolysis
complete hemolysis:produces a toxin destroys blood cells
define alpha hemolysis
partial hemolysis
define gamma hemolysis
no hemolysis: no change in blood cells
define hemolysis
blood cell lysising (splitting/dividing)
What type of agar is in the blood agar/hemolysis?
sterile sheep agar
Describe the appearance of beta hemolysis?
clear
Describe the appearance of alpha hemolysis?
green
Describe the appearance of gamma hemolysis?
Remains color of the blood agar
What are the 2 types of Staph common on people?
Staphylococcus aureus & Staphylococcus epidermidis
What stain color is the Staphylococcus aureus?
yellow
What stain color is the Staphylococcus epidermidis?
pink
Example of both selective & differentiate media.
mannitol salt agar
What is the NaCl percentage for mannitol salt agar?
7.5%
True or False: mannitol salt agar inhibits bacteria
true
Is Sabouraud’s Dextrose Agar a selective or differentiate media?
selective
True or false: the Sabouraud’s Dextrose Agar does not inhibit bacteria?
false
What is the pH of Sabouraud’s Dextrose Agar?
5.6
What are the 2 types of metabolisms?
catabolism & anabolism
Define catabolism
breaking down large molecules into smaller ones
Define anabolism
building small molecules into larger molecules
name some examples of catabolism
the digestive system, glycolysis & krebs cycle
name some examples of anabolism
DNA synthesis, DNA replication & protein synthesis
list the 6 classes of enzymes (S.H.I.T.L.O)
synthetase=polymerase=ligase; hydrolase; transferase; isomerase; lyase; oxidoreductase
Classes of enzymes: moves a functional group between molecules
transferase
Classes of enzymes: causes a double bond to break or to form
lyase
Classes of enzymes: rearranges the atoms within a molecule
isomerase
Classes of enzymes: causes the loss or gain of Hydrogen and/or electrons
oxidoreductase
Classes of enzymes: breaks large molecules into smaller ones, by adding water
Hydrolase
Classes of enzymes: builds small molecules into larger molecules
Sythetase=polymerase=ligase
describe synthetase
synthesis
describe polymerase
chains of repeating units
Give an example of a polymerase
glycogen (glucose=monomer)
describe ligase
2 things combined together
What happens when there is less potential energy?
oxidation is loss
What happens when there is more potential energy?
reduction is gain
Oxidation is
loss
Reduction is
gain
What are the 2 elements of an organic molecule?
Carbon & Hydrogen
FADH2 –>
FAD
C6H12O6 –>
CO2
Give 2 examples of C6H12O6
glucose, fructose or galactose
NADH –>
NAD
What is usable energy?
ATP
What is potential energy?
NADH
Define substrate
the molecule(s) that is changed by the enzyme
Describe enzymes
- usually proteins (complicated, delicate, unique 3D structures)
- biological catalysts
- reused
- usually ends in “-ase”
Define catalyst
speeds up reaction
define enzyme helpers
attach to the enzyme & complete the shape
alter it then substrate can attach
When the enzyme helpers fail what happens to metabolism?
it decreases because the shape wasn’t completed or altered therefore it can’t connect with substrate
Describe cofactor
inorganic minerals
Give examples of a cofactor
calcium & magnesium
describe coenzyme
organic vitamin
Give examples of a coenzyme
Vitamin B12 & folic acid
Give an example of an activation energy
CO2 in H2O –> carbonic acid & hydrogen ions
Activation energy is higher & reaction itself is slower outside the body (7up). Inside our RBC’s have enzymes that catalyze this process using less activation energy
Describe the graph of enzyme activity & temperature
10C= not denatured; 37C=optimal; 50*C= denatured
Describe the graph of enzyme activity & pH
pH 0= denatured; pH 7= optimal; pH 10(+)= denatured
Describe the graph of enzyme activity & concentration
Ex: lactase –> lactose (start with lactase add bits of lactose to reach saturation point)
Describe saturation
completely covered or supplying so much of something that no more is wanted
What happens right after ~P?
Production of ATP
What class of enzymes is pyruvate kinase?
transferase
What class of enzymes is aldose?
lyase
List Products of Glycolysis
2 pyruvic acids, 2 NADH, 2ATP
List the reactants of Intermediate Step
2 pyruvic acids
List the products of Intermediate Step
2 CO2(waste; oxidized) 2 NADH (reduced) 2 Acetyl-CoA
List the reactants of Krebs Cycle
2 Acetyl-CoA(2C)
List the products of Krebs Cycle
6 NADH(reduced) 2 FADH2(reduced) 4 CO2(waste) 2 ATP
List the reactants of Electron Transport Chain
all NADH(10) all FADH2(2) O2
List the products of Electron Transport Chain
34 ATP
H2O
What is the final electron acceptor in ETC?
O2
Krebs Cycle in Eukaryotes takes place in the?
Mitochondrial Matrix
Krebs Cycle in Prokaryotes takes place in the?
Cytoplasm
ETC in Eukaryotes takes place in the?
Mitochondrial Cristae
ETC in Prokaryotes takes place in the?
Cell Membrane
In the ETC O2 if needed 1 NADH equals how many ATP; 1 FADH2 equals how many ATP?
1 NADH –> 3 ATP
1 FADH2 –> 2 ATP
Calculating Energy: How many ATP is produced in Glycolysis?
6 ATP (because 2 NADH x 3 = 6)
Calculating Energy: How many ATP is produced in Intermediate Step?
6 ATP (because of 2 NADH x 3 = 6)
Calculating Energy: How many ATP is produced in the Krebs Cycle?
22 ATP (because of 6 NADH x 3 = 18; 2 FADH2 x 2 = 4)
Calculating Energy: How many ATP total is produced in the ETC?
34 ATP (6 ATP: GLycolysis + 6 ATP: Int. Step + 22 ATP: Krebs Cycle = 34 ATP total)
Why is blood red?
the iron hemoglobin holds iron w/in RBC’s
What grows on blood agar?
everything
Which media loses RBC’s?
beta hemolysis
Does bacteria grow on Gamma Hemolysis? Explain
yes; no change in RBC’s, where colony is changed
Which hemolysis is the one we want in us?
Gamma Hemolysis
Where is Sabouraud’s Dextrose Agar often used?
the industries
Which media compares and contrasts between types of microbes?
differential media
Sabouraud’s Dextrose Agar is selective for?
fungi
What does acid do?
makes pH drop
What is the pH indicator?
Phenol Red
Mannitol Salt Agar starts out what color?
Red
When pH drops what color is the MSA?
yellow
What bacteria grows on MSA rapidly and changes the color to “yellow”?
Staphylococcus aureus
If the MSA is pink what kind of Staph is it?
Staphylococcus epidermidis
Is streptococcus a halophile?
no
Define metabolism
all chemical reactions in living cells & organisms
Describe catabolism in glycolysis
glucose broken down to pyruvate
Food molecules will have C & H together unless they are what?
Photosynthetic organism
What makes NADH, FADH2 & C6H12O6 reduced?
Has hydrogens
NADH is what derivative?
Niacin derivative
FADH2 is what derivative?
Riboflavin derivative
How do we get energy from ATP?
by breaking high energy phosphate (~P) bonds
What has more calories, hydrogens & potential energy than carbs?
fats
Name 2 enzyme helpers
cofactor & coenzyme
What is a catalystic site?
active site where an enzyme fits with a substrate
What needs to be presented at he catalytic/active site inorder for an enzyme to fit w/ a substrate?
cofactor and/or coenzyme
Define holioenzyme
enzyme w/ a cofactor and/or coenzyme needed
Define apoenzyme
enzyme w/o a cofactor or coenzyme; cant work alone
Which are larger Enzymes or Substrates? Explain
Enzymes b/c they are big proteins
Define flat lining (graph for enzyme activity and concentration)
when you have more substrates than enzymes
Define Negative Feedback Inhibition
Excess product inhibits pathway
- by binding on an enzyme in the pathway
- changing shape and blocking the pathway
When does Negative Feedback happen?
early on in the pathway
How many steps can pathways be?
any number of steps
When should a pathway be stopped?
When theres excess products not being used
Give an example of a pathway & # of steps.
Glycolysis-10
How is a pathway stopped?
- a product attaches to an earlier enzyme in the pathway
- inhibiting the substrate from changing shape
- moves along the path
When does the pathway start again after it has been stopped?
when there’s no longer enough product
Why are pathways stopped?
- cells want to make maximum use of Rx’s
- waste of products when it could be used for other Rx’s
When do we want a pathway to continue?
when the product is being used as its made
Which 2 mechanisms can turn a pathway on and off?
- a product attaching to an early enzyme
- genetic control
What kind of molecule is pyruvate?
3 carbon molecule
Describe glucose as a molecule structurally
- 6 C sugar
- C1: Aldehyde group
- lots of OH groups
The aldehyde group on glucose is also known as what?
Terminal Carbonyl
Kinase moves what functional group between molecules?
phosphate groups
Which enzyme moves the phosphate off ATP onto the Glucose 6-phosphate?
Hexokinase
Where does the phosphate come from on the 1st carbon in glycolysis?
ATP
What stages of glycolysis do we spend ATP? A total of how many spent?
Step 1 & 3; total of 2 ATP
What are the functional groups on Glyceraldehyde 3-phosphate & their location?
1st C: Ketone group
3rd C: Phosphate group
2nd C:OH group
What is the most common pathway?
Glycolysis
What pathway is used by a lot of bacteria & cyanobacteria?
Pentose Phosphate Pathway
What types of Rx is Pentose Phosphate Pathway used for?
Anabolic Rx
In pentose phosphate pathway, what substrate does it start with?
glucose
What is ribose used for?
used when cells need to make nucleotides
Bacteria that modifies ribose nucleotides changes ribose to what?
Deoxyribose
What is the Calvin-Benson Cycle of photosynthesis?
DArk reaction in photosynthesis
What uses the Calvin-Benson/Dark Reaction of photosynthesis?
Cyanobacterium
What is the purpose of Calvin-Benson Cycle?
- fixing carbon sugars to make glucose
- make bigger sugars(6-C sugars)
- used to make nucleotides
Which pathway does cells make nucleotides?
Pentose Phosphate Pathway
What pathway do cells use if they need to make amino acids?
Pentose Phosphate Pathway
So, Pentose Phosphate Pathway is use for what?
making nucleotides and amino acids
What is the universal pathway?
Glycolysis
Aside from Pentose Phosphate Pathway, what is the other alternative pathway?
Entner-Douoroff Pathway
Entner-Douoroff Pathway: what bacteria is used in this pathway?
Pseudomonas aeruginosa
Pseudomonas aeruginosa: what is the Gram stain & shape?
Gram (-)
rod
Pseudomonas aeruginosa: where does it live?
unusual & harsh environments
Pseudomonas aeruginosa: have unusual enzymes that does what?
break down caustic organic molecules to make food
Pseudomonas aeruginosa: what do they use for food?
caustic organic molecules
Pseudomonas aeruginosa: why is it used in warm water for oil spills?
metabolize oil quickly
Pseudomonas aeruginosa: why is it not used in cold water –> Alaska?
metabolism is slow
Pseudomonas aeruginosa: why is it pathogenic to us?
likes body temperature: 37*C
Pseudomonas aeruginosa: name an example of where they live.
artificial nails
Pseudomonas aeruginosa: why is it a big problem in healthcare?
it breaks down disinfectants & breaks down/consumes antibiotics
Pseudomonas aeruginosa: give example of who could die from this bacteria when infected right away.
- newborns
- people in ICU
- people w/ comprised immunity
What do some yeast do with pyruvic acid?
produces CO2 & Ethenol (drinkable alcohol)
What is the film outside of grapes? What is its purpose?
Film-yeast
Purpose-ferments sugars & produces waste(CO2) & Ethenol
What makes the big holes in swiss cheese?
CO2 thats accumulated
What does Clostridium produce?
Acetone & Isoproponal (rubbing alcohol)
What is the product of making vinegar?
acetic acid
Is fermentation anaerobic or aerobic?
anaerobic
Is energy(ATP) produced in fermentation?
No (only 2 ATP from Glycolysis)
List 4 possible fermentation products. The products are called what?
Lactic Acid Ethanol CO2 Acetic Acid (Diagnostic)
What is phosphorylation & where do phosphates come from?
Phosphorylation-makes ATP
Phosphates comes from substrates
Phosphorylation: what is the source of the phosphates?
inorganic phosphates just floating around
Phosphorylation: what is the source of energy?
H+
proton gradient
Phosphorylation: where does it take place?
on a membrane (inner membrane of mitochondria)
Phosphorylation: make ATP’s using what?
sunlight
Phosphorylation: what kind of phosphates are used?
inorganic phosphates