Group A detail (6-11) Flashcards
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals): Microbiome:
Microbiome: micorooganisms in a particular environment
-20,000 human genes, there are 2-20 million microbial and viral genes -to maintain homeostasis, there is species specific microbials
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals): Importance of microbiome:
Provides energy
Regulates metabolic processes by modifying the concentrations of intermediers
Drives, and makes digestion more efficient
Can induce or reduce inflammation
Can cause or reduce oxidative stress
Can be genotoxic powerful in damaging genetic information and gene expression or
carcinogenic
Can be involved in the development of: autism, allergy, autoimmune diseases, colon cancer,
hepatic encephalopathy, IBS, diabetes, obesity, depression
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals): Bacteria
One of the first, simplest, unicellular life forms on earth 3.5 billion years ago
Free-living, symbionts, or pathogenic
Most adaptable creatures
Can change plasmids (operons)
Can modify their metabolism
genome based on the nutrients available
Make up more than half of the global biomass
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals): Bacterial cellular respiration/generation of energy:
Requires electron donor, electron acceptor, cell membrane, hydrogen, and water
Periplasm intermembrane space between 2 cell membranes
Enzymes in the inner membrane pump hydrogens from cytoplasm to the periplasm
Transmembrane gradient of H+ is formed, equalization occurs producing energy than can be
transformed into chemical bonds
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals):The role of archae in the biosphere:
One of first life forms on earch
High level of horizontal gene transfer
In plankton communities, swamps, deep water sediments, ruminant guts extremofils
Free living, or symbiotic, no parasites
Enzymes, genomes and metabolic pathways more complex than bacteria
Use H2 and CO2 as electron donors
Decompose cellulose in intestines of mammals
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals):The role of protozoans in the biosphere:
Promote and stabilize the species richness and functional diversity of microbiota of the gut
Unicellular eukaryotes, free living, symbionts or pathogenic
Heterotrophic
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals):the role of fungal lifestyle in nature:
Uni or multicellular eukaryotes - thalli
Thallus forming produce hyphae can structure and rearrange their body according to the
environment
do not have tissues mass of branching hyphae
heterotrophic consume living, or dead organic materials
symbionts (2/3), parasitic or free-living
most have aerobic respiration, others are facultative or obligate anaerobic (in intestines)
secrete extracellular digestive enzymes into the environment and absorb dissolved
molecules via the surface of their body
can decay large biopolymers with a complex chemical structure
break down rocks to make minerals water soluble and possible to uptake
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals):interactions of plants and fungi:
mycorrhiza soil-inhabiting fungi colonize plant roots, supporting metabolism by higher
surface area for nutrient uptake, nutrients metabolized from biopolymers, by protection
against parasites and with fungal hormones
endophytic complete their life cycle among cells of living plant tissues providing fungal
metabolites and extra chemical characteristics to plants, provide stronger resistance against
drought stress and parasites
yeasts unicellular, free-living, obligate anaerobes
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals): Main goals of primary metabolism:
biosynthesis of simple chemical compounds universal among eukaryotes: essential amino acids, nucleotides, carbohydrates, fatty acids
generation of energy
maintanence of cellular respiration
continuous production of starting compounds for the pathways of primary and secondary
metabolism
breakdown and preparation for excretion of unnecessary compounds
- The most important pathways of primary metabolism: the role of plants, fungi and bacteria in the biosphere (their relationships with animals): citric acid cycle:
consumes acetyl-CoA carb, fatty acid, and amino acid metabolism are interconnected via acetyl-CoA
CO2 is released via physiological respiration
Intermediers are the starting compounds of anabolic processes
Carried out in the matric of mitochondria
Maintenance of homeostasis
- Photosythesis and respiration and their role in plant metabolism: Photosynthesis
- Light energy is being converted into chemical energywhich is stored in bonds of sugar (sucrose)
- Happens in plants, and some algae (chloroplast) basic element of plant metabolism
- Calvin- Benson- Cycle
- Plants need light energy (sun), water and carbon dioxide to produce sugar (O2=waste
product)
- Photosythesis and respiration and their role in plant metabolism: Happens in the chlorophyll in chloroplast (green pigment) in the leaves
No chloroplast in the upper and lower epidermis, vascular bundles (veins), mesophyll and stomates
o Stomates = allows CO2 and O2 exchange (holes in lower epidermis)
o Vascular bundles (veins): essential for the leaf transportation system (bring water and nutrients to the place it is needed)
o Mesophyll: photosynthesis site (chloroplast located)
- Photosythesis and respiration and their role in plant metabolism:Chloroplast components:
o Inner and outer membranes,
thylakoids stacked in grana,
stroma, intermembrane space
o Thylakoid ́s membrane: chlorophyll built into (absorbs blue and red lightgreen).
ENERGY ABSORBED BY BLUE AND RED LIGHT LEADS TOPHOTOSYNTHESIS
- Photosythesis and respiration and their role in plant metabolism: Phototsynthesis
Light reaction also produce ATP and NADPH: immediate energy storage
- Dark reaction: CO2 fixation and reductiontriose-phosphatesucrose
- C3 photosynthesisrice. Sucrose stored either in vacuoles or transported.
- C4 photosynthesismaize (double CO2 fixation cycle a more efficient system)
- CAM photosynthesis Pineapple
- Photosythesis and respiration and their role in plant metabolism:Respiration
- Respiration is the counter metabolic activity from photosynthesis
- Necessary for survival for plants and other
living beings - The energy which is stored is being released - Metabolic work can be done
- The whole process is controlled by enzymes - conducted in all living cells - releases water and carbon dioxide
- Plants: gases diffuse passively through the epidermal cells or through the stroma
- Photosythesis and respiration and their role in plant metabolism: The relationship between the photosynthesis and respiration:
- The products of one process are the reactants of the other process.
- Cellular respiration: C6H12O6 + 6 O2 -> 6 CO2
- Photosynthesis: 6 CO2 + 6 H2O -> C6H12O6 +
+ 6 H2O + 6 O2
- The role of secondary metabolites; major carbohydrate and phenoloid compounds: Primary metabolites:
- synthesized directly from inorganic compounds (simple sugars, amino acids
- General plant metabolites: fatty acids, proteins, carbohydrates (essential compounds for life
processes and growth)
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Secondary metabolites:
- Derivided from primary metabolites
- Non-general compounds with small proportions in cells (volatile oils, alkaloids)
- Major role: interspecific interactions, specific defense compounds (deter herbiovers)
- Produced by specific cells and stored in the vacuoles and intercellular cavities
- Not essential for life processes
- Not part of primary metabolism and energy flow in the plant
- Occurrence is taxon-specific
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Role of secondary metabolism in plants:
- Regulation of growth: plant hormones (gibberellic acid)
- Allopathic compounds: regulate the growth of other species (growth-stunning effect)
- Pollinator attractants: to support fertilization or to catch insect (carnivorous plants)
- Insecticides: pyrethroids against lice and fleas
- Insect repellents: Thymol against snails, linalool against moths
- Defense mechanism against herbivores: solanine (solanum spp.)
- Antimicrobial and antifungal effect: inhabitation of growth and reproduction
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Main groups of secondary metabolites:
Saccharides Phenolides Polyketides Terpenoids Azotids
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Carbohydrates
- Monosaccharides, oligosaccharides and polysaccharides
- Sweet taste and water soluble
- Important nutrient
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Disaccharides
- Two joined monosaccharides
- Dietry energy source
- Sucrose (non reducing), lactose and maltose (reducing)
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Oligosaccharides:
- Consists of different monossacharide units
- Storage and transport carbohydrates
- Components of fibers
- May be non-digestible (mainly in fabaceae) ->cause bloating
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Polysaccharides:
- Homopolysaccharides: starch, cellulose, inulin
- Heteropolysaccharides: mucilage, gums, pectins
(structural and storage polysaccharides)
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Carbohydrates with antinutritive effects Non starch polysaccharides (NSP)
- Major structural elements in the cell wall= cellulose, hemicellulose pectin mainly in forage legumes
- If the proportion of NSP is highdecreased energy value and digestibility of the forage decreased production
- In cereals and pulse cropsin the cells of the endosperm
- Beta-glucans and arabinoxylans (oat, barley) has high water absorption capacityincreased
viscositysticky face syndrome
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Non-digestible oligosaccharides
- Raffinose, stachyose and verbascose are non-digestible oligosaccharides
- Pass unchaged to the colonintestinal bacteria ferment them to gasesbloating effect
- Mainly in fabaceoues plants
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Phenolids
Consists of one or more aromatic rings and with an OH (hydroxyl) group.
- Phenoloids mainly biosynthezises from shikimic acid or cinnamic acid
- Phenolic compounds are general in many plant taxa
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Cinnamic acid derivates:Lignoids
o Phenylpropane units
o Lignins: polymer molecules of the secondary cell wall
o Lignans: dimer molecules, anti-inflammatory, antioxidant and estrogen like effect.
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Cinnamic acid derivates:Coumarines
o Phenylpropane units
o Occurs only in members of Apiaceae, Asteraceae, Fabaceae and Rutaceae
o Anticoagulant effect
o Melilotus officinalis (yellow sweet clover)
o Furanocoumarine: photosensitization
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Cinnamic acid derivates:Phenolic glycosides
o Widley distributed in the nature
o The aglycone part is a phenolic compound with alcoholic or aldehyde groups
o May act as flavours, but may also have medical effects (aspirin)
- The role of secondary metabolites; major carbohydrate and phenoloid compounds:Cinnamic acid derivates:Quinones
o Natural occurrence in Rosaceae and Ericaceae
o Naphthoquinones, hydroquinones
o Staining compounds
o Can derived from shikimic acid also
- The role of secondary metabolites; major carbohydrate and phenoloid compounds: Shikimic acid derivates (quinone is also):Flavonoids
o Subdivided into groups due to the position of phenyl ringisoflavones,
neoflavones, true flavonoids
o Due to degree of unsaturation and oxidation, true flavonoids can be divided into
several group
- The role of secondary metabolites; major carbohydrate and phenoloid compounds: Shikimic acid derivates (quinone is also):Biological effects of (iso)flavonoids:
o Activation of cytochrome-P450 enzymes
o Antioxidant effect neutralizes free radicalsdecreasing toxic effects and oxidative
stress, which may lead to unwanted biological reactions.
o Immonstimulant effect the exact mechanism is still unknown o Anti-inflammatory agents
o Can be used to prevent cardiovascular diseases
o Isoflavonoids are phytoestrogens with insecticide activity
- The role of secondary metabolites; major carbohydrate and phenoloid compounds: Shikimic acid derivates (quinone is also):Tannins
o Tannin containg plants: Quercus spp.
o Dicot families are rich in tannins: Rosaceae, Fabaceae, Geraniaceae
o Hydrolyzable tannins: a glucose with phenolic groups (gallic acid)
o Condensed tannins: oligomers or polymers of flavonoid units (catechin) o (Poly)phenolic molecule
- The role of secondary metabolites; major carbohydrate and phenoloid compounds: Shikimic acid derivates (quinone is also):Biological effects of tannins:
o Precipitate proteins > water insoluble complexes
o Antinutritive and poisonous effects:
Tannins depresses feed intake (plant defense against herbiovers)
Tannins interfere with protein and carbohydrate absorption and digestive enzymes
o Treatment of diarrhea
o Decreased urinary excretion, necrosis of liver and renal tubules
- The major groups of polyketides and terpenoids: Main groups of secondary metabolites:
- Saccharides
- Phenolids
- Polyketids
- Terpenoids
- Alkaloids