Gene Expression Flashcards
Genome
Total complement of genetic material contained in an organism or cell
Includes both genes & noncoding sequences of DNA
Complete DNA sequence of 1 set of chromosomes
Genomics
Study of genomes of related organisms
Gene
Unit of heredity in living organisms
Encoded in a sequence nucleotide that make up a strand of DNA
Can have multiple different forms = alleles
Structure of a gene
5’-3’ orientation
Coding strand & template strand
Composed of: Promoter, coding regions & enhancers
Promoter
Initiates transcription
Enhancer
Regulatory sequence that increases the likelihood that transcription of particular gene will occur
TATA box
DNA sequence that indicates where a genetic sequence can be read & encoded
Open Reading Frame (ORF)
Part of reading frame that has the potential to be translated & encode a protein
Eukaryotic gene
Composed of exons & introns
1 gene is transcribed into 1 mRNA
CAT box
For binding of transcription factors
Prokaryotic gene
Without introns
Organized into operons
Several genes are transcribed into 1 mRNA
Operon
Genes in an operon are transcribed as a group & have single promoter
Coding Region
Portion of gene (RNA/DNA) composed of exons, that codes for a protein
Sigma factor
Protein needed only for initiation of transcription
Enables specific binding of RNA polymerase to gene promoters
Hairpin loop
Unpaired loop of mRNA that is created when an mRNA strand folds & forms base pairs with another section of the same strand
Ribosome
Composed of rRNA & proteins
Found in cytoplasm
Found in matrix/stroma
Can be free/fixed (rER)
Svedberg Coefficient
For measurement of relative size of particle by rate of sedimentation in centrifugal field
Polysom
A cluster of ribosomes connected by a strand of mRNA & actively synthesising protein
Chaperones
Proteins that assist the covalent folding or unfolding of proteins
Constitutive expression
Constitutive genes are expressed continuously
Regulation of Prokaryotic Expression
Constitutive expression
Adaptive expression
Regulation of Eukaryotic Expression
Modification of DNA & histone Transcriptional control RNA Interference RNA Processing control RNA Transport control Regulation of translation Protein activity control
Ubiquitination
Regulated degradation of proteins in cell
ATP is needed
ONLY IN EUKARYOTES
Ubiquitin
Conserved small protein
Used to target proteins for destruction
IN ALL ORGANISMS
Proteasome
Complex of enzymes that degrades endogenous proteins
SUMP proteins
Compete for binding sites with ubiquitin
Influence protein activity
Do no lead to their degradation
Homeobox genes
Regulatory genes that direct the development of particular body segments or structure
Homeobox
DNA sequence within homeobox genes
Hox genes
Highly conserved subset of homeobox genes
Determine the location of body segment in a developing fetus or larva
Homeodomain
Protein domain
Acts as an on/off switch for gene transcription
Post-translational modification
Formation of mature protein product
RNA interference
RNA molecules inhibit gene expression or translation by neutralising targeted mRNA molecules