Chapter 3 Flashcards
Most important tool for studying microorganisms
Microscope
Use visible light to observe objects
Magnify images approximately 1,000x
Microscope
can magnify images in excess of 100,000x
Electron microscope,
can view individual atoms
Atomic-‐force microscope
Light passes through specimen, then through series of magnifying lenses
Light Microscopy
Most common and easiest to use
bright-field microscope
Magnification
Resolution
Contrast
the ability of a microscope to determine two closely related objects as separate objects
resolution
maximum resolving power of most bright field microscopes
- 2 um
- This is sufIicient to see most bacterial structures
- Too low a resolution to see viruses
Microscope has two magnifying lenses
compound microscope
two lenses on compound microscope
oscular and objective lens
- MagniIication is equal to the factor of the ocular x the objective
- 10x X 100x = 1,000
Uses light condenser to concentrate light on sample
BrightIield Microscope
deIined by the minimum distance between two objects where those objects appear as separate objects
Resolving power
depends on the quality of lenses and wavelength of illuminating light
Resolution
The first to observe bacteria, achieved a reolution of about 1.4 um
AvL
Resolution is enhanced with lenses of higher magniIication (100x) by the use of
immersion oil
The oil reduces
light refraction
- Light bends as it moves from glass to air
- oil bridges the gap between the specimen slide and lens and reduces refraction
immersion oil has nearly same refractive index as
glass
Reflects the number of visible shades in a specimen
contrast
higher contrast for microscope is achieved through
specimen staining
Amplifies differences between refractive indexes of cells and surrounding medium
Phase-Contrast
Uses set of rings and diaphragms to achieve resolu:on
Phase-‐Contrast
reflects number of visible shades, this is great except it kills some of the cells
Phase-Contrast
Causes specimen to appear three dimensional
Interference Scope
Most frequently used interference scope is
Nomarski differen:al interference contrast
Used to observe organisms that are naturally fluorescent or are flagged with fluorescent dye
Fluorescence Microscope
absorbs ultraviolet light and emits visible light
Fluorescent molecule
-Image fluoresces on dark background
Computer used to re-construct three dimensional image of thicker structures
Confocal Scanning Laser Microscope
Provides detailed sectonal views of internal structures of an intact organism
Confocal Scanning Laser Microscope
Laser sends beam through sectons of organism and then Computer constructs 3-‐D image from sec:ons
Confocal Scanning Laser Microscope
Reverse image
-Specimen appears bright on a dark background
Dark-‐Field Microscope
“Like a photographic negative”
Dark-‐Field Microscope
Achieves image through a modified condenser
Dark-‐Field Microscope
- Used to observe fine detail
- Directs beam of electrons at specimen
- Electrons pass through or sca7er at surface
Transmission Electron Microscope (TEM)
Shows dark and light areas, darker areas more dense
Transmission Electron Microscope (TEM)
specimen preparation for TEM
- thin sectioning
- freeze fracturing or freeze etching
- can often introduce artifacts
- Used to observe surface detail
- Beam of electrons scan surface of specimen
Scanning Electron Microscope (SEM)
Specimen coated with metal, usually gold
Scanning Electron Microscope (SEM)
- Electrons are released and reflected into viewing chamber
- Some atomic microscopes capable of seeing single atoms
Scanning Electron Microscope (SEM)
set out to examine the details of rabies virus
Eran Perlson- set up a system to grow asymmetric nerve cells in observation chamber and use live cell imaging to track hoe rabies virus particles are transported along the axons.
Most common strategy to change contrast and observe organisms
Dyes and Staining
using stains are made of
organic salts
carry (+) or (-‐) charge on the molecule
Divided into basic or acidic based on charge
dyes
carry positive charge and bond to cell structures that carry negative charge
basic dyes
-commonly stain the cells
carry negative charge and are repelled by cell structures that carry negative charge
Acidic dyes
-commonly stain the background
- uses one stain
- Allows for increased contrast between cell and background
- All cells stained the same color
- No differentiation between cell types
Simple stain
ex/ hematopoietic cell smear
-Used to distinguish one cell type from another
DifferenAal Stains
Two most common bacterial differenAal stains
gram stain
acid fast stain
- Most widely used procedure for staining bacteria
- Dr. Hans Christian Gram
gram stain
Stained purple/blue
gram positive
stained red or pink
gram negative
primary stain in gram stain
crystal violet
mordant in gram stain
grams iodine
-fixes primary dye in cell
decolorizer in gram stain
usually alcohol
-removes primary dye from gram negative cell
counter or secondary stain in gram stain
safranin
-recolors cells that lose stain through decolorization
Used to stain organisms that resist conventional staining
Acid-‐fast Stain
Acid fast staining is particularly useful in staining members of genus..
Mycobacterium
High lipid concentraAon in cell wall prevents uptake of dye, ‘waxy’ mycolic acid
Acid-‐fast Stain
- Use heat to facilitate staining
- Once stained difficult to decolorize
Acid-‐fast Stain
Presumptive identification in diagnosis of clinical specimens
Acid-‐fast Stain
primary dye acid fast
- carbol fuchsin
- colors acid fast bacteria red
decolorizer acid fast
- generally acid alcohol
- removes stains from non acid fast bacteria
counter stain acid fast
- methylene blue
- colors non acid fast bacteria blue
- Example of negative stain
- Allows capsule to stand out around organism
Capsule stain
can appear as clear region in Gram or simple stains
Endospore stain
uses gentle heat to facilitate staining
Endospore stain
Staining increases diameter of flagella
Makes visible with light microscope resolution
Flagella stain
arrangement of prokaryotic cells depends on
plan of division
architecture can specify division planes in Staphylococcus aureus.
Peptidoglycan
- static in location
- Extrapolymeric substance (EPS)
- dynamic community structure helps recruitment of nutrients and survival in harsh conditions
biofilm
rigidity of bacterial cell wall is due to..
peptidoglycan- ONLY FOUND IN BACTERIA