Ch 18- Biosynthesis Flashcards

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1
Q

Another name for biosynthesis

A

Anabolism

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2
Q

What is biosynthesis?

A

Building of complex molecules

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3
Q

Essential elements for biosynthesis

A

CHON, etc

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4
Q

What processes are used to obtain energy?

A

ATP hydrolysis, NADPH oxidation, ion flow down transmembrane concentration gradient

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5
Q

How to obtain substrates

A

Glycolysis and TCA cycle

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6
Q

What is secreted? Biosynthesis

A

Antibiotics, toxins, quorum signals, biofilm matrix

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7
Q

PEP + CO2 → Oxaloacetate

A

Anaplerotic reactions

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8
Q

Why does the TCA cycle reverse?

A

for reduction of CO2 and regenerate acetyl-CoA and sugars

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9
Q

Reductive TCA cycle uses

A

4-5 ATP for 4-5 molecules of CO2 and one oxaloacetate

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10
Q

What are the reducing agents?

A

NADPH or NADH

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11
Q

Who uses the Acetyl-CoA pathway?

A

Anaerobic soil bacteria, autotrophic sulfate reducers, methanogens

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12
Q

What happens in the acetyl-CoA pathway

A

2 CO2 molecules converge pathways to form the acetyl group of acetyl CoA

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13
Q

What is the reducing agent for acetyl-CoA pathway?

A

H2

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14
Q

Who uses the 3-hydroxypropionate cycle?

A

Thermophiles: Chloroflexus and Sulfolobus

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15
Q

What happens during 3-hydroxypropionate cycle

A

Acetyl-CoA condenses with CO2 and reduced by 2NADPH to 3-hydroxypropionate

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16
Q

Overall outcome of 3-hydroxypropionate cycle

A

3 CO2 molecules are fixed into one molecule of pyruvate»substrate for biosynthesis

17
Q

What is nitrogen fixation?

A

Conversion of atmospheric nitrogen into ammonia
N2»NH4+

18
Q

How much ATP is consumed during N2 fixation?

A

40 ATP

19
Q

The four reduction cycles through nitrogenase

A

Uses ATP, FeMo, 2e- ,and H2 to reduce in N2 Fixation

20
Q

Why does Nitrogen Fixation require regulation?

A

It uses a lot of energy

21
Q

O2 and NH4+ regulate expression of which gene?

A

nif gene (encode nitrogenase)

22
Q

Other nif regulators are:

A

sigma factor 54 and NtrB-NtrC signal transduction system

23
Q

How do bacteria assimulate NH4+?

A

2-oxogluterate»glutamate or
glutamate»glutamine

24
Q

Transamination is

A

The transfer of ammonia to two metabolites

25
Q

How do glutamate and glutamine contribute to biosynthesis?

A

Make amino acids

26
Q

Purines and pyrimidines are built onto which structure?

A

Ribose 5-phosphate substrate
ATP»AMP

27
Q

Purine is made from

A

Iosine
AMP and GMP

28
Q

Pyrimidine is made from

A

Uracil
CMP and TMP