Biochem Flashcards
Glycogen storage diseases Very Poor Carbohydrate Metabolism
VON GIERKE glucose 6 phosphatase POMPES alpha 1 4 glucosidase CORI alpha 1 6 glucosidase MCARDLE glycogen phosphorylase
Glucose transporters not requiring insulin
GLUT 13 brain kidney placenta GLUT 2 liver pancreatic B cell SI Kidney
GLUT requiring insulin
GLUT 4 Heart Skeletal muscle Adipocytes
GLUT 1
RBC COLON Brain KidneyPlacenta
GLUT 3
Brain Kidney Placenta
GLUT 5
Small intestines
Location of glycolysis
cytoplasm
3 carbon end products of glycolysis
Pyruvate or Lactate
rate limiting step of glycolysis
PFK 1 from fructose 6 phosphate TO fructose 1 6 bisphosphate
3 irreversible steps of glycolysis
1 phosphorylation of glycose via GLUCOKINASE or HEXOKINASE. 2 phosphorylation of fructose 6 phosphate via PFK1. 3 formation of pyruvate via PYRUVATE DEHYDROGENASE.
No of ATP from substrate level phosphorylation in Glycolysis
4 ATP
No of ATP needed for glycolysis
2 ATP
ATP production in glycolysis using KINases ie phosphate transfer into ADP
1 3 biphosphoglycerate and PEP
NADH prodc in glycolysis
glycealdehyde 3 phosphate to 1 3 bisphosphoglycerate via a DEHYDROGENASE
Malate aspartate shittle liver kidney heart vs glycerol phosphate shuttle in brain and sk ms
Malate 1 NADH to 3 ATP via NADH e acceptor complex I while Glycerol 1 NADH to 2 ATP via FADH e acceptor in complex II
organs that are Strictly anaerobic glycolysis
RBC lens cornea medulla of kidney testes WBC
NET ATP yield from Glycolysis
Anaerobic 2 ATP. Aerobic ATPs ff NADG 4 or 6 with net ATP of 6 or 8 depending on shuttle used.
Function of 2 3 Bisphosphoglycerate
reduces Hgb affinity for O2 hence releasing it. Note fetal hgb has higher 2 3 biphosphoglycerate than mom
Arsenic poison competes with
1competes with phosphate as substrate for GLYCERALDEHYDE 3 P DEHYDROGENASE 2 binds lipoic acid so PYRUVATE DEHYDROGENASE wont work therefore no NADH is produced during glycolysis to go into ETC
MC enzyme defect in glycolysis
Pyruvate kinase deficiency presents as chronic hemolytic anemia
2 enzymed requiring 5 co enzymes
1 pyruvate dehydrogenase 2 Alpha ketogluterate Dehydrogenase of TCA
5 co enzymes of the divas Love Never Fails To Conquer
Lipoic acid Niacin riboFADin Thiamine Co enzyme A with B5
MCC congenital lactic acidosis
Pyruvate dehydrogenase deficiency X linked
Site of TCA
mitochondrial matrix EXCEPT succinate dehydrogenase aka Complex II in inner mitochondria
substrate of TCA
ACETYL COA fr pyruvate
UP above acid vs base
above pka. Acid is unprotonated with negative charge. Base is unprotonated with charge. Charged is water soluble. Uncharged is lipid soluble.
rate limiting step of TCA
isocitrate to alpha ketogluterate via isocitrate dehydrogenase
Steps in TCA Cindy is Kind So She Forgives More Often
Citrate Isocitrate Ketogluterate Succinyl Coa Succinate Fumarate Malate Oxaacetate
dehydrogenase always produces an
NADH
Citrate
fatty acid synthesis
succinyl coa
heme synthesis
malate
may be used for gluconeogenesis
TCA where NADH is produced
1 isocitrate dehydrogenase 2 alpha ketogluterate dehydrogenase 3 malate dehydrogenase
TCA where FADH is produced
succinate dehydrogenase
TCA where GTP is produced
succinate thioKINase
ATP yield fr TCA starting fr Acetyl Coa or Pyruvate
must multiply by 2 coz 2 acetyl coa entered TCA per glucose. acetyl coa 12 or pyruvate 15. nu shuttle needed coz inside mitochondria.
goal of gluconeogenesis
prevent hypoglycemia
site of gluconeogenesis
90 percent in LIVER. 10 percent in KIDNEY. Esrd prone to hypogly coz in fasting kidney does 40 percent of work.
Gluconeogenesis subtrate
pyruvate
rate limiting step in gluconeogenesis
fructose 1 6 bisphosphate to fructose 6 phosphate via Fructose 1 6 bisphosphatase
Cori cycle of Gluconeogenesis
lactate fr sk ms and rbc converted to GLUCOSE in liver and then given back
hexokinase or glucokinase in glycolysis is _____________________ in gluconeogenesis
glucose 6 phosphatase in ER
PFK 1 in glycolysis is ______________ in gluconeogenesis
fructose 1 6 bisphosphatase in CYTOSOL
pyruvate kinase in glycolysis is _______________ in gluconeogenesis
Pyruvate carboxylase in Mitochondria. Requires biotin and ATP. Activated by Acetyl coA.
co factor of carBoxylase
Biotin
home of glucose 6 phophate enzyme
liver and kidney. Recall gluconeogenesis ito. Wala sa muscle kaya me cori cycle.
ATP requirement for gluconeogenesis
4 atp from burning of fat ie beta oxydation.
gluconeogenesis produces NADH. ETOH metab also produces NADH shunting reaction away from gluconeogenesis and towards
1 pyruvate to lactate 2 OAA to malate 3 DHAP to glycerol 3 phosphate aka FA synthesis
storage of glycogen in
LIVER for export and MUSCLE for internal use
glycogen bond for elongation
alpha 1 to 4 glycosidic bond
glycogen bond for branching
alpha 1 to 6 glycosidic bond
shared enzyme gluconeogenesis and glycogenolysis
glucose 6 phosphatase in ER
enzymes are DEPHOSPHORALATED in ______________ state
well fed
enzymes are PHOSPHORALATED in ______________ state
fasting
Gluconeogenesis. Enzyme used in Pyruvate TO Oxaloacetate and where
Pyruvate carboxylase in Mitochondria. Requires biotin and ATP. Activated by Acetyl coA.
Gluconeogenesis. Enzyme used in Oxaloacetate TO Phosphoenolyruvateand and where
PEP Carboxikinase in Cytosol. Requires GTP.
Inhibits by glucose 6 phosphate
Hexokinase
Disulfiram reaction secondary to accumulation of __________ via
reaction that is zero order kinetics
Acetaldehyde
Alcohol dehydrogenase Acetaldehyde dehydrogenase ETOH-------------------> acetaldehyde -------------> acetate NAD to NADH NAD to NADH
Functions of PTH 4
- Inc bone resorption of calcium and phosphate
- Inc kidney reabsorption of calcium in distal convoluted tubule
- Dec reabsorption of phosphate in proximal convoluted tubule
- Inc 1 25 OH2 D3 calcitriol production by stimulating kidney 1 alpha hydroxylase
Derivatives of phenylalanine
Thyroxine Melanin
^ ^ Vit C SAM
Phenylalanine -> tyrosine -> dopa ->dopamine-> NE ->Epi
Tryptophan derivatives
+ b6: Niacin -> NAD/NADP
Tryptophan
Serotonin -> melatonin
Derivative of Histidine
Histamine
Derivatives of Glycine
Glycine + b6 = porphyrin -> heme
Derivatives of Arginine
Creatinine
Urea
Nitric oxide
Derivatives of glutamate
1GABA from Glutamate + B6
2 glutathione
Characteristics of gluckokinase
1 not inhibited by glucose 6 phosphate unlike hexokinase
2 higher michaelis menten constant aka low affinity for glucose but with higher maximum reaction rate hence larger capacity than hexokinase once activated
Essential amino acids
PVT TIM haLL always argues never tyres
A for arginine, T is not for tyrosine
Phenylalanine
Valine
Tryptophan
Threonine
Isoleucine
Methionine
histidine - becomes essential in times of Stress
arginine
Leucine
Lysine
Inhibits by glucose 6 phosphate
Hexokinase
Disulfiram reaction secondary to accumulation of __________ via
reaction that is zero order kinetics
Acetaldehyde
Alcohol dehydrogenase Acetaldehyde dehydrogenase ETOH-------------------> acetaldehyde -------------> acetate NAD to NADH NAD to NADH
Functions of PTH 4
- Inc bone resorption of calcium and phosphate
- Inc kidney reabsorption of calcium in distal convoluted tubule
- Dec reabsorption of phosphate in proximal convoluted tubule
- Inc 1 25 OH2 D3 calcitriol production by stimulating kidney 1 alpha hydroxylase
Derivatives of phenylalanine
Thyroxine Melanin
^ ^ Vit C SAM
Phenylalanine -> tyrosine -> dopa ->dopamine-> NE ->Epi
Tryptophan derivatives
+ b6: Niacin -> NAD/NADP
Tryptophan
Serotonin -> melatonin
Derivative of Histidine
Histamine
Derivatives of Glycine
Glycine + b6 = porphyrin -> heme