560B BIOCHEMISTRY & NUTRITION Flashcards
The lack of which muscle enzyme causes glucose when phosphorylated in the muscle to be trapped?
a. glucokinase
b. glucose-6-phosphatase
c. glycerol-3-phosphatase
d. hexokinase
D. Hexokinase
You eat a cheeseburger and a fresh salad. Which of the following molecules in your food is NOT normally oxidized in aerobic respiration to generate ATP?
a. lipids
b. amino acids
c. nucleic acids
d. carbohydrates
c. nucleic acids (DNA/RNA)
Which hormone triggers the muscle to breakdown glycogen and carry out glycolysis over the longer term?
a. insulin
b. growth hormone
c. epinephrine
d. glucagon and epinephrine
b. growth hormone
Which hormone[s] cause[s] the liver to breakdown glycogen and carry out gluconeogenesis?
a. insulin
b. glucagon
c. epinephrine
d. glucagon and epinephrine
d. glucagon and epinephrine
Which hormone[s] trigger[s] adipose tissue to store fatty acids as triacylglycerols?
a. insulin
b. glucagon
c. epinephrine
d. glucagon and epinephrine
A. Insulin
Catalysts that change the rate of reactions are what category of physiological proteins?
a. hormones
b. enzymes, which don’t alter the equilibrium
c. enzymes, which alter the equilibrium
transport proteins
b. enzymes, which don’t alter the equilibrium
T or F: For every amino acid, there is a specific, unique transport system for digestion.
False
The hemoglobin molecule is ____ easily saturated with oxygen than is myoglobin, at a given partial pressure of oxygen.
A. More
B. Less
B. Less
T or F: Ammonia formed from muscle amino acid degradation is transferred in the blood in the form of glutamine.
True
Thermodynamically speaking, which value most specifically and directly defines whether a biochemical reaction is spontaneous or not?
ΔG (gibbs free energy)
When pyridoxal phosphate amine is formed, that means that:
Transamination is occurring
What are 3 metabolic sources of ammonia?
purines and pyrimidines, diet, bacterial degradation of urea
Activation Energy is the required energy to reach the transition state. How does it work?
Enzymes speed up chemical reactions by lowering the activation energy
Enzyme-Substrate Complex
Enzymes hold substrate by:
· Hydrogen bonds
· Van der Walls forces
· Electronic attractions
· Conformation of the active site determines the specificity of the enzyme
· Only the substrate that fits, will enter the chemical reaction
Cofactors (which activate the enzymes) are small molecules that some enzymes require for activity.
The 2 main classes of cofactors are:
· Coenzymes (organic molecules derived from vitamins)
· Metals
Holoenzyme: an enzyme with its cofactor
Apoenzyme: an enzyme without the cofactor
The hemoglobin molecule is ____ easily saturated with oxygen than is myoglobin, at a given partial pressure of oxygen.
A. More
B. Less
B. Less
T or F: Ammonia formed from muscle amino acid degradation is transferred in the blood in the form of glutamine.
True
What 3 parts are attached to the central carbon of an amino acid?
a hydrogen atom, a carboxyl group, an amine group
The urea cycle takes place partly in the ____ and partly in the ____.
Mitochondria, cytosol
During transamination, one product is always?
Glutamate
What are 3 metabolic sources of ammonia?
purines and pyrimidines, diet, bacterial degradation of urea
The _____ forms of amino acids are incorporated into human protein.
L isomer
The electrochemical, oxidative/reductive environment is closely related to local pH, which is a critical factor in:
the way a protein folds
With regard to ALT and AST:
- they are two muscle proteins that allow muscle contraction
- they have little clinical diagnostic value in the case of liver damage
- they are used in the oxidative deamination process
- they both require pyridoxal phosphate (vitamin B-6) as a coenzyme
- they both require pyridoxal phosphate (vitamin B-6) as a coenzyme
Amino acids within a given protein that do not differ from species to species are defined as _____, because they are essential to the function of that protein.
Invariant
With regard to the different forms of water in the cell, which is not true?
- water at the surface of a protein can bare on how much of a particular ion binds to that protein
- sodium and potassium both being positive would be expected to bind to a proteins surface to the same degree
- water is responsible, at least in part, for formation of microenvironments within the cell
- the high specific heat of water helps maintain body temperature in cases where some of the heat energy that is produced from a biochemical reaction (and that is not used for driving other biochemical reactions) is given off as heat
- the ATP-requiring sodium/potassium pump only partly explains the partitioning of sodium and potassium outside and inside the cell membrane, respectively
- sodium and potassium both being positive would be expected to bind to a proteins surface to the same degree
Which is correct regarding protein structure?
A. there are at least two subunits that are needed to form quaternary structure
B. most tertiary structures contain a hydrophobic inner center
C. multiple subunits make repair of the protein easier, as less energy is wasted repairing places that are not in need of repair
D. all of the above are true
D. all of the above are true
Which is true regarding protein?
- amino acid pools are small in part because protein is not the main body fuel
- amino acid pools are small in part because there are no proteins and their related enzyme systems designed specifically for amino acid storage
- urea is formed in the liver, because there is a great deal of amino acid degradation there
- all of the above are true
- all of the above are true
True/false: The Km is a measure of the enzyme’s velocity at the substrates concentration that allows the reaction to reach maximum velocity.
False; Km is defined as the substrate concentration at 1/2 the maximum velocity
True/false: the straight line portion of the Michaelis/Mention represents the initial velocity.
True
True false: Regarding enzymes, the sigmoidal shape curve kinetics represents a multi-subunit and/or multi-active site enzyme, which could be subject to both enzyme induction and feedback regulation (inhibition).
True
A change in the activity and conformation of an enzyme resulting from the binding of a compound at a site on the enzyme other than the active binding site; can be associated with taut and relaxed state.
Allosterism
Collagen is composed of about one third _____ because that amino acid is small and the collagen is compact.
Glycine
Electrophoresis of a person’s _____ can identify a patient with sickle cell trait vs. one with full blown sickle cell anemia.
Hemoglobin
Regarding antibody structure:
A. the variable region is the only part of the structure that differs among antibodies, thus being thermodynamically efficient regarding their synthesis
B. the antibody fits with its antigen according to the lock and key theory
C. the C regions of an antibody vary considerably from antibody type to antibody type
D. all of the above are true
A. the variable region is the only part of the structure that differs among antibodies, thus being thermodynamically efficient regarding their synthesis
Regarding Insulin:
A. it is composed of a single polypeptide chain of 51 amino acids
B. it is not synthesized in zymogen form, because it is not a potentially destructive enzyme
C. its structure is stabilized by disulfide bonds
D. it is synthesized as an inactive precursor known as peptide
C. its structure is stabilized by disulfide bonds
Regarding enzymes:
A. the activity of the enzyme can be affected by what’s associated with its domains
B. lyases catalyze the formation of bonds, such as C-O and C-S, accompanied by the use of ATP
C. enzymes alter the equilibrium of a reaction
D. allosteric enzymes show a hyperbolic-shape curve
E. all of the above are true
A. the activity of the enzyme can be affected by what’s associated with its domains
Regarding enzymes:
A. a whole metabolic pathway can be controlled by controlling the activity of a key enzyme that is involved in that pathway
B. a transition state is one where the enzyme is complexed to a very high-energy level, relatively unstable intermediate
C. for thermal effects upon enzymes, a bell shaped curve would be expected
D. all of the above are true
D. all of the above are true
Myoglobin shows which kind of structure? A. Primary B. Secondary C. Tertiary D. Quaternary
C. Tertiary
True/False: protein phosphatases can remove phosphate groups from enzymes.
True
True/False: Internal respiration centers on the fact that oxygen is the final electron acceptor in the electron transport system.
True
True/False: The electron transport system is located within the mitochondrial matrix.
False; it is found in the inner mitochondrial membrane
Pyruvate can be converted to _____ when there is insufficient oxygen in the tissue and when there is a high NADH/NAD+ ratio, as occurring in heavily-exercising muscle, for example.
Lactate
Fructose 2,6-bisphosphate strongly stimulates phosphofructokinase and inhibits fructose 1,6-bisphosphatase. Hence, _____ is accelerated and _____ is diminished in the fed state.
Glycolysis, gluconeogenesis
True/false: The covalent regulation of both glycogen synthase and glycogen phosphorylase depends upon their respective states of phosphorylation.
True
Which steps in glycolysis release ATP?
1) 1,3-BPG to 3-PG
2) PEP to Pyruvate
In this equation of Bronsted-Lowrey (B-L) acid/base formula, select the TRUE answer:
NH3 + H2O = NH+4 + OH-
A. NH3 is the B-L conjugated base, and H20 is the B-L acid.
B. NH+4 is the B-L conjugated acid, and Oh- is the B-L conjugated base.
C. Nh3 is the B-L acid, and Oh- is the B-L base
D. Nh+4 is the B-L acid and Oh- is the B-L base
B. NH+4 is the B-L conjugated acid, and Oh- is the B-L conjugated base.
Select the FALSE answer:
A. Cellular membranes are made up of various phospholipids that affect the fluidity of the membrane
B. Exergonic reactions require energy to go to completion.
C. Compartmentalization is a way for cells to create smaller parts for protecting specialized reactions to occur with in an area.
D. In the end, entropy wins and the organism dies.
B. Exergonic reactions require energy to go to completion.
Select the TRUE answer:
A. Endergonic reactions are spontaneous.
B. Water lines up along the surface of a protein with the hydrogen ion binding to the positive on the surface of the protein.
C. Exothermic reactions consume energy and heat.
D. Compartmentalization is the way for the cell to increase surface area without being small.
D. Compartmentalization is the way for the cell to increase surface area without being small.
Select the TRUE answer:
A. Under certain chronic conditions an individual may not be able to synthesize certain amino acids.
B. A buffer should have a pH very different from the pH that you want to maintain.
C. When the intake of protein is greater than the excretion of nitrogen, the person is in a negative nitrogen balance.
D. Essential amino acids can be synthesized by our body.
A. Under certain chronic conditions an individual may not be able to synthesize certain amino acids.