organic chemistry - essential reaction mechanisms Flashcards
homolytic mechanism
each fragment possesses one of bonding e- = radicals
bond broken = radicals
heterolytic mechanism
one of the fragments retain both bonding e- = ions
bond broken = ions
homogenic mechanism
radical - e- donated by each fragment
bond making
heterogenic mechanism
polar - 2 e- donated by one fragment
bond making
agents
radicals - unpaired e- - Cl.
polar - nucleophile and electrophile
nucleophile
e- pair introduced into e- deficient substrate
anion (H-,OH-)
neutral molecule - NH2, HOH
electrophile
e- deficient binds to substrate centre with higher e- density
cation - Br+
neutral molecule - Lewis acids , AlCl3
nucleophilic substitution
typical of haloalkane
Nu- -> HS-, HO-, Cl-
2 mechanisms - Sn1 and Sn2
Sn2
substitution + Nu- biomolecular
single step and no intermediate - Nu- react with alkyl halide/ substrate from direction opposite of leaving group
Sn2 results and equation
inversion of configuration
rate = K[R-Hal][Nu]
Sn1 steps
2 steps - unimolecular Nu- sub 1 reaction
- leaving group dissociate = carbocation intermediate - need more energy - slow step - rate limiting step
- carbocation - structure e- deficient - not fulfil octane - unstable and v. reactive - fast step
Sn2 results and equation
racemisation of configuration
rate = K[R-Hal]
addition - electrophilic addition
E form covalent bond - attach e- rich unsaturated C=C bond
typical of alkene and alkynes
nucleophilic addition
Nu- attach C=C and Y= O,S,N etc
double bond goes to Y and Nu attaches to C=C
Y attaches to E
nucleophilic addition - compounds with C=O
carries partial charges and Nu - H2O, OH, carbanion
example of nucleophilic addition
aldehyde/ketone
hemi-acetyl formation - acid/ base catalysed (has mechanisms)
in nature - hemi-acetyl formed in monosaccharides - open chain D glucose B-D- glucose
elimination
beta elimination
e.g. glycolysis - 2-phosphoglycerate phosphoenol-pyruvase + water
3 mechanisms - E1, E2, E1cB
E2
one step bimolecular reaction mechanism
E1
2 step unimolecular reaction mechanism involve carbocation intermediate step wise action
E1cB
2 step reaction mechanism involving carbanion intermediate
step wise action - most biologically relevant
rearrangement
often migration of H atom, changing position of double bond
rearrangement - Keto-erol tautomerism of carbonyl compounds and example
equilibrium between keto and erol form
e.g. isomerisation of monosaccharide occur via enol form - glucose fructose